View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_334 (Length: 232)
Name: NF6876A_low_334
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_334 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 12416025 - 12416248
Alignment:
| Q |
1 |
caatgagatggacatcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactcc----atatatatcatgaca |
96 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12416025 |
caatgagatg-atatcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccatagatatatatcatgaca |
12416123 |
T |
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| Q |
97 |
tgatctagtgcgttattaagacacattaggc--nnnnnnnntctgaaggatttgcttgcaagaaattaagacaggattagtacatatggcaactcaaatt |
194 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12416124 |
tgatctagtgcgttattaagacacattaggcaaaacaaaaatctgaaagatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaatt |
12416223 |
T |
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| Q |
195 |
gaacaaagcagaagcaaactgaaaa |
219 |
Q |
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| T |
12416224 |
gaacaaagcagaagcaaactgaaaa |
12416248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 12428085 - 12428308
Alignment:
| Q |
1 |
caatgagatggacatcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactcc----atatatatcatgaca |
96 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12428085 |
caatgagatg-atatcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccatagatatatatcatgaca |
12428183 |
T |
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| Q |
97 |
tgatctagtgcgttattaagacacattaggc--nnnnnnnntctgaaggatttgcttgcaagaaattaagacaggattagtacatatggcaactcaaatt |
194 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12428184 |
tgatctagtgcgttattaagacacattaggcaaaacaaaaatctgaaagatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaatt |
12428283 |
T |
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| Q |
195 |
gaacaaagcagaagcaaactgaaaa |
219 |
Q |
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||||||||||||||||||||||||| |
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| T |
12428284 |
gaacaaagcagaagcaaactgaaaa |
12428308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 12402229 - 12402298
Alignment:
| Q |
21 |
aagatgttttacaaacaaaaaacagattttgacatg-----ctggtgagtcacaaacaaatactccatat |
85 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12402229 |
aagatgttttacaaacaacaaacagattttgacatgctggtctggtgagtcacaaacaaatactccatat |
12402298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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