View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_335 (Length: 231)
Name: NF6876A_low_335
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_335 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 3429197 - 3429006
Alignment:
| Q |
20 |
accaacattcttggctacccctgtagttttgtccatcattgacaaagatattgacaaccttgtacttgttccaactacttccacttcacaagaaaatgaa |
119 |
Q |
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| T |
3429197 |
accaacattcttggctacccctgtagttttttccatcattgacaaagatattgacaaccttgtacttgttccaactacttccacttcacaagaaaatgaa |
3429098 |
T |
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| Q |
120 |
ggttcttgttcttcacaacataggcagtgattgtgtttcactagctagttggttagtaaaatcatgtggtagatactagtggtaggtgttag |
211 |
Q |
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| T |
3429097 |
ggttcttgttcttcacaacataggcagtgattgtgtttcactagctagttggttagtaaaatcatgtggtagatactagtggtaggtgttag |
3429006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 3425717 - 3425544
Alignment:
| Q |
21 |
ccaacattcttggctacccctgtagttttgtccatcattgacaaagatattgacaaccttgtacttgttccaactacttccacttcacaagaaaatga-- |
118 |
Q |
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| T |
3425717 |
ccaacattcttggctacccctgtagttttgtccatcattaacaatgaaattgacaaccttgtacttgttccagctacttccacttcacaagaaaatgaag |
3425618 |
T |
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| Q |
119 |
-aggttcttgttcttcacaacataggcagtgattgtgtttcactagctagttggttagtaaaatcatgtggtag |
191 |
Q |
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| T |
3425617 |
taggttcttgctcttcacaacatagacaatgattgtgtttcattacctagtttgttggtaaagtcatgtggtag |
3425544 |
T |
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