View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_336 (Length: 231)

Name: NF6876A_low_336
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_336
NF6876A_low_336
[»] scaffold0179 (2 HSPs)
scaffold0179 (17-140)||(7653-7776)
scaffold0179 (17-140)||(12587-12710)
[»] chr3 (7 HSPs)
chr3 (17-140)||(26845992-26846115)
chr3 (22-140)||(47537398-47537516)
chr3 (22-133)||(50544354-50544465)
chr3 (25-140)||(48191932-48192047)
chr3 (25-112)||(33121237-33121324)
chr3 (54-98)||(19222260-19222304)
chr3 (76-140)||(43121558-43121622)
[»] chr5 (4 HSPs)
chr5 (17-140)||(20208611-20208734)
chr5 (27-140)||(6049358-6049471)
chr5 (19-140)||(7000657-7000778)
chr5 (25-140)||(4415592-4415707)
[»] chr1 (6 HSPs)
chr1 (17-140)||(26720786-26720909)
chr1 (22-140)||(47106573-47106690)
chr1 (38-140)||(10711053-10711155)
chr1 (25-140)||(17708112-17708227)
chr1 (27-140)||(30110817-30110930)
chr1 (22-133)||(21335269-21335379)
[»] chr6 (7 HSPs)
chr6 (22-140)||(17873710-17873828)
chr6 (38-140)||(11060751-11060853)
chr6 (27-140)||(18051341-18051454)
chr6 (27-139)||(17079084-17079196)
chr6 (37-140)||(9199144-9199247)
chr6 (98-140)||(649958-650000)
chr6 (49-102)||(4474855-4474908)
[»] chr4 (8 HSPs)
chr4 (22-140)||(10563201-10563319)
chr4 (27-140)||(20395731-20395844)
chr4 (22-138)||(53780175-53780291)
chr4 (37-140)||(42778383-42778486)
chr4 (25-140)||(53486845-53486960)
chr4 (25-140)||(30273704-30273819)
chr4 (25-140)||(34322211-34322326)
chr4 (36-140)||(18106448-18106552)
[»] scaffold0007 (1 HSPs)
scaffold0007 (27-140)||(182264-182377)
[»] chr8 (3 HSPs)
chr8 (22-140)||(23680292-23680410)
chr8 (22-138)||(45255722-45255838)
chr8 (27-140)||(17658966-17659079)
[»] chr7 (3 HSPs)
chr7 (22-140)||(7458563-7458681)
chr7 (22-140)||(4077405-4077523)
chr7 (25-140)||(34231832-34231947)
[»] chr2 (2 HSPs)
chr2 (36-140)||(2999640-2999744)
chr2 (37-140)||(1380227-1380330)


Alignment Details
Target: scaffold0179 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 7653 - 7776
Alignment:
Q  17 catcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagaga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653 catcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagaga 7752  T
Q  117 aacatcagtcaataaagccctaca 140  Q
    ||||||||||||||||||||||||    
T  7753 aacatcagtcaataaagccctaca 7776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 12587 - 12710
Alignment:
Q  17 catcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagaga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12587 catcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagaga 12686  T
Q  117 aacatcagtcaataaagccctaca 140  Q
    ||||||||||||||||||||||||    
T  12687 aacatcagtcaataaagccctaca 12710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 26845992 - 26846115
Alignment:
Q  17 catcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagaga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26845992 catcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagaga 26846091  T
Q  117 aacatcagtcaataaagccctaca 140  Q
    ||||||||||||||||||||||||    
T  26846092 aacatcagtcaataaagccctaca 26846115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 47537398 - 47537516
Alignment:
Q  22 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 121  Q
    |||| ||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || || ||||| ||||||    
T  47537398 tttgtagtcagcaagtgatatgaaccacgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctaaaacaaaatctagcagaaaaacat 47537497  T
Q  122 cagtcaataaagccctaca 140  Q
    |||||||||||||||||||    
T  47537498 cagtcaataaagccctaca 47537516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 50544354 - 50544465
Alignment:
Q  22 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 121  Q
    |||| |||||||||  |||||||||||||||| | |||||||||| ||||||| |||| ||||||||| |||||||||||| |  |||||||||||||||    
T  50544354 tttgtagtcaacaatagataagaaccgcgaactgagtaaccctcaccagggtctggcagccacacccatctgtctgaaacaaattcttgcagagaaacat 50544453  T
Q  122 cagtcaataaag 133  Q
    ||||||||||||    
T  50544454 cagtcaataaag 50544465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 48191932 - 48192047
Alignment:
Q  25 gaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcag 124  Q
    ||||||| || |||||| ||||| ||||||| ||||||| | | |||||| || ||||||||||||||||| |||||| || |||||| |||||||||||    
T  48191932 gaagtcagcatgtgatatgaaccacgaacagagtaacccaccaaagggtctggaaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcag 48192031  T
Q  125 tcaataaagccctaca 140  Q
    ||||||| ||||||||    
T  48192032 tcaataaggccctaca 48192047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 33121324 - 33121237
Alignment:
Q  25 gaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgca 112  Q
    ||||||| || |||||| ||||| ||||||| ||||||| | | |||||| |||||||||||||||||||| |||||| || ||||||    
T  33121324 gaagtcagcatgtgatatgaaccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgca 33121237  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 19222304 - 19222260
Alignment:
Q  54 agtgtaaccctcaacagggtcaggcaaccacacccacctgtctga 98  Q
    |||| |||||||||||||||| |||||||||||||||||||||||    
T  19222304 agtgcaaccctcaacagggtctggcaaccacacccacctgtctga 19222260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 43121622 - 43121558
Alignment:
Q  76 ggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagccctaca 140  Q
    |||||||| |||||| |||||||||||  | | |||||||||||||||  |||||||| ||||||    
T  43121622 ggcaaccaaacccacttgtctgaaacattagcatgcagagaaacatcaagcaataaagtcctaca 43121558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 20208734 - 20208611
Alignment:
Q  17 catcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagaga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  20208734 catcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctgaaacataaacttgcagaga 20208635  T
Q  117 aacatcagtcaataaagccctaca 140  Q
    ||||||||||||||||||||||||    
T  20208634 aacatcagtcaataaagccctaca 20208611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 6049358 - 6049471
Alignment:
Q  27 agtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtc 126  Q
    ||||| ||||||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||| | || |||||| |||||||||||||    
T  6049358 agtcagcaagtgatatgaaccgcgaacagtataacccttaacagggtctggcaaccacacccacctgtcggaaaaaaaatcttgcaaagaaacatcagtc 6049457  T
Q  127 aataaagccctaca 140  Q
    ||||||||||||||    
T  6049458 aataaagccctaca 6049471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 7000778 - 7000657
Alignment:
Q  19 tcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaa 118  Q
    |||||||  |||| |||| |||| ||||||||||||||||||||||||   ||||| ||||||||||||||| |||||||||||||| || |||||||||    
T  7000778 tcatttgtggtcagcaagcgatatgaaccgcgaacagtgtaaccctcagtggggtctggcaaccacacccacttgtctgaaacagaatctagcagagaaa 7000679  T
Q  119 catcagtcaataaagccctaca 140  Q
    ||||| ||||||||||||||||    
T  7000678 catcaatcaataaagccctaca 7000657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 4415707 - 4415592
Alignment:
Q  25 gaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcag 124  Q
    |||||||||| || ||| ||||| ||||||| ||||||| | | |||||| |||||||||||||||||||| |||||| || |||||| |||||||||||    
T  4415707 gaagtcaacatgtaatatgaaccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcag 4415608  T
Q  125 tcaataaagccctaca 140  Q
    ||||||| ||||||||    
T  4415607 tcaataaggccctaca 4415592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 26720786 - 26720909
Alignment:
Q  17 catcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagaga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||||||||||    
T  26720786 catcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtctgacgaccacacccacctgtctgaaacaaaaacttgcagaga 26720885  T
Q  117 aacatcagtcaataaagccctaca 140  Q
    ||||||||||||||||||||||||    
T  26720886 aacatcagtcaataaagccctaca 26720909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 47106690 - 47106573
Alignment:
Q  22 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 121  Q
    |||| ||||| ||||||||| ||||||||||||||  | |||||||||||||| |||||||||||||||||||| |||||| || |||||| ||||||||    
T  47106690 tttgtagtcagcaagtgatatgaaccgcgaacagta-acccctcaacagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacat 47106592  T
Q  122 cagtcaataaagccctaca 140  Q
    |||||||||||||||||||    
T  47106591 cagtcaataaagccctaca 47106573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 10711155 - 10711053
Alignment:
Q  38 gataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagccct 137  Q
    |||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||| | |||||||||||| ||||||| |||    
T  10711155 gatatgaaccacgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctgaaacaaaatcttggaaagaaacatcagttaataaagtcct 10711056  T
Q  138 aca 140  Q
    |||    
T  10711055 aca 10711053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 17708112 - 17708227
Alignment:
Q  25 gaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcag 124  Q
    ||||||| || |||||| ||||| ||||||| ||||||| ||| |||||  |||||||||||||| |||||||||||| || |||||| |||||||||||    
T  17708112 gaagtcagcatgtgatatgaaccacgaacagagtaacccacaaaagggtttggcaaccacacccatctgtctgaaacaaaatcttgcaaagaaacatcag 17708211  T
Q  125 tcaataaagccctaca 140  Q
    ||||||| ||||||||    
T  17708212 tcaataaggccctaca 17708227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 30110930 - 30110817
Alignment:
Q  27 agtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtc 126  Q
    ||||| || |||||| ||||| ||||| ||||| ||||||| |||||| || |||||||||||||| ||||||||| || |||| |||||||||||||||    
T  30110930 agtcagcatgtgatatgaaccccgaactgtgtacccctcaaaagggtctggtaaccacacccacctatctgaaacaaaatcttgtagagaaacatcagtc 30110831  T
Q  127 aataaagccctaca 140  Q
    ||  ||||||||||    
T  30110830 aaagaagccctaca 30110817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 21335379 - 21335269
Alignment:
Q  22 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 121  Q
    |||| |||||||| ||||||||| |||||||| | ||| || |||| ||||||  ||||||| ||||||||||||||||||  | | |||| ||||||||    
T  21335379 tttgtagtcaacaggtgataaga-ccgcgaactgagtacccttcaaaagggtcctgcaaccatacccacctgtctgaaacattagcctgcaaagaaacat 21335281  T
Q  122 cagtcaataaag 133  Q
    ||  ||||||||    
T  21335280 caagcaataaag 21335269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 17873828 - 17873710
Alignment:
Q  22 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||| || ||||||||||||||||||||||||||| || |||||||||||||||    
T  17873828 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacaaaatcttgcagagaaacat 17873729  T
Q  122 cagtcaataaagccctaca 140  Q
    |||||||||||||||||||    
T  17873728 cagtcaataaagccctaca 17873710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 11060853 - 11060751
Alignment:
Q  38 gataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagccct 137  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || || ||||||||| ||||||||||||| ||||    
T  11060853 gataagaaccgcgaacagtgtaaccctcaaaagggtcaggcaaccacacccacctgtcagaaacataatctagcagagaaatatcagtcaataaatccct 11060754  T
Q  138 aca 140  Q
    |||    
T  11060753 aca 11060751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 18051454 - 18051341
Alignment:
Q  27 agtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtc 126  Q
    ||||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| | || |||||| | |||||| ||||    
T  18051454 agtcaccatgtgataagaaccacgaacagtgtaaccctcaacagggtcagacaaccacacccacctgtctgaaataaaatcttgcaaataaacattagtc 18051355  T
Q  127 aataaagccctaca 140  Q
    ||||||||||||||    
T  18051354 aataaagccctaca 18051341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 17079196 - 17079084
Alignment:
Q  27 agtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtc 126  Q
    ||||| || |||||| ||||| |||||||| |||||||||||| |||| ||||||||||||||| ||||||||||| || |||||| |||||||||||||    
T  17079196 agtcagcatgtgatatgaaccacgaacagtataaccctcaacaaggtctggcaaccacacccacttgtctgaaacaaaatcttgcaaagaaacatcagtc 17079097  T
Q  127 aataaagccctac 139  Q
    |||||||||||||    
T  17079096 aataaagccctac 17079084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 9199247 - 9199144
Alignment:
Q  37 tgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagccc 136  Q
    ||||| ||||||||||||| ||||||| ||| | |||| |||||||| ||||||||||||||||||||| || ||| |||||||||||||||||| ||||    
T  9199247 tgatatgaaccgcgaacagagtaacccacaatatggtctggcaaccaaacccacctgtctgaaacagaatctcgcaaagaaacatcagtcaataatgccc 9199148  T
Q  137 taca 140  Q
    ||||    
T  9199147 taca 9199144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 650000 - 649958
Alignment:
Q  98 aaacagaaacttgcagagaaacatcagtcaataaagccctaca 140  Q
    ||||| || |||||| |||||||||||||||||||||||||||    
T  650000 aaacaaaatcttgcaaagaaacatcagtcaataaagccctaca 649958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 4474855 - 4474908
Alignment:
Q  49 cgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaaca 102  Q
    |||||||| |||||| | ||||||||||  ||||||||||| ||||||||||||    
T  4474855 cgaacagtataaccccccacagggtcagataaccacacccatctgtctgaaaca 4474908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 10563319 - 10563201
Alignment:
Q  22 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||| || ||||||||||||||||||||| ||||| || |||||||||||||||    
T  10563319 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctaaaacaaaatcttgcagagaaacat 10563220  T
Q  122 cagtcaataaagccctaca 140  Q
    |||||||||||||||||||    
T  10563219 cagtcaataaagccctaca 10563201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 20395731 - 20395844
Alignment:
Q  27 agtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtc 126  Q
    ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||    
T  20395731 agtcagcatgtgataagaaccacgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtc 20395830  T
Q  127 aataaagccctaca 140  Q
    ||||||||||||||    
T  20395831 aataaagccctaca 20395844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 53780175 - 53780291
Alignment:
Q  22 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 121  Q
    |||||||||||||||||||| |||||||||||||||||||||| || ||| || ||||||||||||||||||||||||||| || |||||||||||||||    
T  53780175 tttgaagtcaacaagtgatatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacaaaatcttgcagagaaacat 53780274  T
Q  122 cagtcaataaagcccta 138  Q
    |||||||||||||||||    
T  53780275 cagtcaataaagcccta 53780291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 42778383 - 42778486
Alignment:
Q  37 tgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagccc 136  Q
    ||||| ||||||||||||| ||||||| ||| ||| || |||||||| |||||||| |||||||||||| |||||| |||||||||||||||||| ||||    
T  42778383 tgatatgaaccgcgaacagagtaacccacaataggatctggcaaccaaacccacctatctgaaacagaatcttgcaaagaaacatcagtcaataaggccc 42778482  T
Q  137 taca 140  Q
    ||||    
T  42778483 taca 42778486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 53486960 - 53486845
Alignment:
Q  25 gaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcag 124  Q
    ||||||| || |||||| ||||| ||||||| ||||||| ||| |||||| ||||||||||| ||||||||||||||| || || ||| |||||||||||    
T  53486960 gaagtcagcatgtgatatgaaccacgaacagagtaacccacaatagggtctggcaaccacactcacctgtctgaaacaaaatctcgcaaagaaacatcag 53486861  T
Q  125 tcaataaagccctaca 140  Q
    ||||||| ||||||||    
T  53486860 tcaataaggccctaca 53486845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 30273819 - 30273704
Alignment:
Q  25 gaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcag 124  Q
    ||||||| || |||||| ||||| ||||||| ||||||| ||| |||||| ||||||||||||||||||||||||||| || |||||| | ||| ||||     
T  30273819 gaagtcagcatgtgatatgaaccacgaacagagtaacccacaaaagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaaaaaatatcaa 30273720  T
Q  125 tcaataaagccctaca 140  Q
    ||||||| ||||||||    
T  30273719 tcaataaggccctaca 30273704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 34322326 - 34322211
Alignment:
Q  25 gaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcag 124  Q
    ||||||| || |||||| ||||| ||||||| ||||||| | | |||||| |||||||||||||||||||| |||||| || |||||| |||||||||||    
T  34322326 gaagtcagcatgtgatatgaaccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcag 34322227  T
Q  125 tcaataaagccctaca 140  Q
    ||||||| || |||||    
T  34322226 tcaataaggctctaca 34322211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 18106552 - 18106448
Alignment:
Q  36 gtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagcc 135  Q
    |||||| |||||  |||||| ||||||| | | |||||| |||||||||||||||||||| |||||| || |||||| |||||||||||||||||| |||    
T  18106552 gtgatatgaaccaagaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataaggcc 18106453  T
Q  136 ctaca 140  Q
    |||||    
T  18106452 ctaca 18106448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 182264 - 182377
Alignment:
Q  27 agtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtc 126  Q
    ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||    
T  182264 agtcagcatgtgataagaaccacgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtc 182363  T
Q  127 aataaagccctaca 140  Q
    ||||||||||||||    
T  182364 aataaagccctaca 182377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 23680292 - 23680410
Alignment:
Q  22 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 121  Q
    |||| ||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| ||||||||    
T  23680292 tttgtagtcagcaggtgatatgaaccgcgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctgaaacagaatctagcaaagaaacat 23680391  T
Q  122 cagtcaataaagccctaca 140  Q
    |||||||||||||||||||    
T  23680392 cagtcaataaagccctaca 23680410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 45255838 - 45255722
Alignment:
Q  22 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 121  Q
    |||| ||||| |||||||||||||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||| || |||||| ||||||||    
T  45255838 tttgtagtcagcaagtgataagaaccgcgaacagtatagccctcaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacat 45255739  T
Q  122 cagtcaataaagcccta 138  Q
    ||| ||| ||| |||||    
T  45255738 cagccaacaaaacccta 45255722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 17658966 - 17659079
Alignment:
Q  27 agtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtc 126  Q
    |||||||||  |||| ||||| | ||||||||||||||||| ||||||| ||||||||||||||||||| |||||| || || |||||||||||||||||    
T  17658966 agtcaacaaacgatatgaaccacaaacagtgtaaccctcaatagggtcaagcaaccacacccacctgtcagaaacaaaatctagcagagaaacatcagtc 17659065  T
Q  127 aataaagccctaca 140  Q
    |||||| |||||||    
T  17659066 aataaaaccctaca 17659079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 7458681 - 7458563
Alignment:
Q  22 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||| || |||||||||||||||||||| ||||||||| |||||||||||||||    
T  7458681 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtcggaaacagaatcttgcagagaaacat 7458582  T
Q  122 cagtcaataaagccctaca 140  Q
     ||| ||||||||||||||    
T  7458581 tagttaataaagccctaca 7458563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 4077405 - 4077523
Alignment:
Q  22 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 121  Q
    |||| ||||||||||||||||||||||||||| || || |||||| |||||||  |||||||||||||||||||||| ||| || |||||| ||| ||||    
T  4077405 tttgtagtcaacaagtgataagaaccgcgaactgtatagccctcagcagggtctagcaaccacacccacctgtctgacacaaaatcttgcaaagacacat 4077504  T
Q  122 cagtcaataaagccctaca 140  Q
    ||  |||||||||||||||    
T  4077505 caaacaataaagccctaca 4077523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 34231832 - 34231947
Alignment:
Q  25 gaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcag 124  Q
    ||||||| || |||||| ||||| ||||||| ||||||  | | |||||| |||||||||||||||||||| |||||| || |||||| ||||||||||     
T  34231832 gaagtcagcatgtgatatgaaccacgaacagagtaacctaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcat 34231931  T
Q  125 tcaataaagccctaca 140  Q
    ||||||| ||||||||    
T  34231932 tcaataaggccctaca 34231947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 2999744 - 2999640
Alignment:
Q  36 gtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagcc 135  Q
    |||||| |||||  |||||| ||||||| | | |||||| |||||||||||||||||||| |||||| || |||||| |||||||||||||||||| |||    
T  2999744 gtgatatgaaccaagaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataaggcc 2999645  T
Q  136 ctaca 140  Q
    |||||    
T  2999644 ctaca 2999640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 1380227 - 1380330
Alignment:
Q  37 tgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagccc 136  Q
    ||||| ||||||||||||| ||||||| ||| ||| || |||||||| |||||||| ||||||||| || |||||| |||||||||||||||||| |||     
T  1380227 tgatatgaaccgcgaacagagtaacccacaataggatctggcaaccaaacccacctatctgaaacataatcttgcaaagaaacatcagtcaataaggcct 1380326  T
Q  137 taca 140  Q
    ||||    
T  1380327 taca 1380330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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