View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_338 (Length: 231)

Name: NF6876A_low_338
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_338
NF6876A_low_338
[»] chr1 (5 HSPs)
chr1 (78-212)||(23915210-23915340)
chr1 (16-76)||(23915125-23915185)
chr1 (18-76)||(23922776-23922834)
chr1 (78-141)||(23922872-23922935)
chr1 (16-68)||(25803226-25803278)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 23915210 - 23915340
Alignment:
Q  78 tgaggagaatgaagaagagacgttacttagggttcttaatttataggcattatgatgcagtaccnnnnnnnnaaggacttcactcagtcaaaataagtca 177  Q
    ||||||||||| |||| ||||||||    |||||||||||||||||||||||| ||||||||||        ||||||||||||||||||||||||||||    
T  23915210 tgaggagaatggagaatagacgtta----gggttcttaatttataggcattataatgcagtaccttttttttaaggacttcactcagtcaaaataagtca 23915305  T
Q  178 atgaatgtagtcagaaagaaattcattcaccatta 212  Q
    |||||||||||||||||||||||||||||||||||    
T  23915306 atgaatgtagtcagaaagaaattcattcaccatta 23915340  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 23915125 - 23915185
Alignment:
Q  16 ataaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccattttctctt 76  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23915125 ataaagatcattgaaatggtgagcaaaatggataaataggttgaagatgccattttctctt 23915185  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 23922776 - 23922834
Alignment:
Q  18 aaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccattttctctt 76  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  23922776 aaagatcattgaaatggtgagcaaaatggataaataggctgaagatgccattttctctt 23922834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 23922872 - 23922935
Alignment:
Q  78 tgaggagaatgaagaagagacgttacttagggttcttaatttataggcattatgatgcagtacc 141  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  23922872 tgaggagagtggagaagagacgttacttagggttcttaatatataggcattataatgtagtacc 23922935  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 25803226 - 25803278
Alignment:
Q  16 ataaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccat 68  Q
    ||||| ||||||||||||||||||||||  |||||||| ||||||| ||||||    
T  25803226 ataaacatcattgaaatggtgagcaaaaatgataaatatgttgaaggtgccat 25803278  T

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