View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_34 (Length: 430)
Name: NF6876A_low_34
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 34565138 - 34565536
Alignment:
| Q |
18 |
atcaggtgacatttgtggcataacatttttcaaggctttcacatttcttattacgaggatttcacatttcttaatcaattgtgagatcatcaatatgcta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34565138 |
atcaggtgacatttgtggcataacatttttcaaggctttcacatttcttattacgaggatttcacatttcttaatcaattgtgagatcatcaatatgcta |
34565237 |
T |
|
| Q |
118 |
ccaatagattgatagcctataccactaacttgcaataaagttgggtccaaatatgaagatcgttgaagatcagtgtatggatccacataaacccaaaact |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34565238 |
ccaatagattgatagcctataccactaacttgcaataaagttgagtccaaatataaagatcgttgaaaatcagtgtatggatccacataaacccaaaact |
34565337 |
T |
|
| Q |
218 |
tttgcaagtttttgaagtccaaacccttgactaaactttcagcccccctaaatttcatctctaacaacctttagctgatgagatannnnnnncaactcgt |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||| |
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|
| T |
34565338 |
tttgcaagtttttgaagtccaaatccttgactaaactttcagcccccctaaattttatctc-aacaacctttagctgatgagatatttttttcaattcgt |
34565436 |
T |
|
| Q |
318 |
tgagcgcaacttcatttcttttccaaggaaaattgtctattctatagtaaagttcttccaaccgagacaatcttatcaagatattatcagaaatgatgtc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34565437 |
tgagcgcaacttcatttcttttccaaggaaaattgtctattctatagtaaagttcttccaaccgagacaatcttatcaagatattatcagaaatgatgtc |
34565536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 34290657 - 34291046
Alignment:
| Q |
18 |
atcaggtgacatttgtggcataacatttttcaaggctttcacatttcttattacgaggatttcacatttcttaatcaattgtgagatcatcaatatgcta |
117 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||||| |||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34290657 |
atcagctgacagttgtgtcagaacatttttcaagcttttcacctttcttattgcaaggatttcacatttcttaatcaattgtgagatcatcaatatgcta |
34290756 |
T |
|
| Q |
118 |
ccaatagattgatagcctataccactaacttgcaataaagttgggtccaaatatgaagatcgttgaagatcagtgtatggatccacataaacccaaaact |
217 |
Q |
| |
|
|||||||||||| | |||| |||||||||| ||| |||||||||| ||| | |||| |||| | || |||||||||||| |||||||| |
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|
| T |
34290757 |
ttaatagattgataatcaatac-------ttgcaataaatttgactccaaatatgcagagtgctgaaaatcactataaagatccacataaatccaaaact |
34290849 |
T |
|
| Q |
218 |
tttgcaagtttttgaagtccaaacccttgactaaactttcagcccccctaaatttcatctctaacaacctttagctgatgagatannnnnnncaactcgt |
317 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||| |||||||||| | || ||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
34290850 |
tttgcaagttgttgaaaaccaaatccttgactaaaatttcagcccctccaactttcatctc-aacaacctttagctgatgagatatctttttcaactcgt |
34290948 |
T |
|
| Q |
318 |
tgagcgcaacttcatttcttttccaaggaaaattgtctattctatagtaaagttcttccaaccgagacaatcttatcaagatattatcagaaatgatg |
415 |
Q |
| |
|
| || | | |||||||| | ||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
34290949 |
tcagtgaagcttcatttttcttccaaggaaaattgtccattctaaagtaaatttcttccaaccgagacaatcttatcaagacattatcagaaatgatg |
34291046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 34553467 - 34553861
Alignment:
| Q |
18 |
atcaggtgacatttgtggcataacatttttcaaggctttcacatttcttattacgaggatttcacatttcttaatcaattgtgagatcatcaatatgcta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
34553467 |
atcaggtgacatttgtggcataacatttttcaagcttttcacctttcttattgcaaggatttcacatttcttaatcaattgtgagaccatcaatatgcta |
34553566 |
T |
|
| Q |
118 |
ccaatagattgatagcctataccactaacttgcaataaagttgggtccaaatatgaagatcgttgaagatcagtgtatggatccacataaacccaaaact |
217 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||||||| ||| |||||||||| ||| || |||| |||| | || |||||||||||| |||||||| |
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|
| T |
34553567 |
ttaatagattgataatctatagcaccgacttgcaataaatttgactccaaatatgcagagcgctgaaaatcactataaagatccacataaatccaaaact |
34553666 |
T |
|
| Q |
218 |
tttgcaagtttttgaagtccaaacccttgactaaactttcagcccccctaaatttcatctctaacaacctttagctgatgagatannnnnnncaactcgt |
317 |
Q |
| |
|
|||| | ||| | |||| ||| |||||||| || |||||| ||| || | ||||||||| ||||||||||||||||||||||| |||||| | |
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|
| T |
34553667 |
tttgtaggttgtataagttcaagtccttgactgaaatttcagtccctctgactttcatctc-aacaacctttagctgatgagatatctttttcaactcat |
34553765 |
T |
|
| Q |
318 |
tgagcgcaacttcatttcttttccaaggaaaattgtctattctatagtaaagttcttccaaccgagacaatcttatcaagatattatcagaaatga |
413 |
Q |
| |
|
||| ||||| ||||||| ||| ||||||||||||||| || || | |||||||||||||| ||||||||||||||||||| |||| |||||||| |
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|
| T |
34553766 |
tgatcgcaatttcatttttttcccaaggaaaattgtccatccttaaataaagttcttccaatcgagacaatcttatcaagacattagtagaaatga |
34553861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 37 - 413
Target Start/End: Original strand, 15894847 - 15895222
Alignment:
| Q |
37 |
ataacatttttcaaggctttcacatttcttattacgaggatttcacatttcttaatcaattgtgagatcatcaatatgctaccaatagattgatagccta |
136 |
Q |
| |
|
|||| |||||||||| ||||||| ||| ||||| | |||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |||| |
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| T |
15894847 |
ataatatttttcaagtctttcactttttttattgcaaggatttcacatttcttaatcacttgtgagatcatcaatatgctatttatatattgataaccta |
15894946 |
T |
|
| Q |
137 |
taccactaacttgcaataaagttgggtccaaatatgaagatcgttgaagatcagtgtatggatccacataaacccaaaacttttgcaagtttttgaagtc |
236 |
Q |
| |
|
|| |||||||||||||||| ||| |||||||||||||||| ||||| || || |||| |||||||||||||||||||||| || ||||| |||||| | |
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|
| T |
15894947 |
tagaactaacttgcaataaatttgactccaaatatgaagatctttgaaaattagagtatcgatccacataaacccaaaacttctgtaagttgttgaagac |
15895046 |
T |
|
| Q |
237 |
caaacccttgactaaactttcagcccccctaaatttcatctctaacaacctttagctgatgagatannnnnnncaactcgttgagcgcaacttcatttct |
336 |
Q |
| |
|
|||| |||||| |||| |||||| || |||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||| | |
|
|
| T |
15895047 |
caaatccttgagtaaaatttcagtacctctaaatttcatctc-aacaacctttagctgatgagatatctttttcagctcgttgatcgcaacttcattttt |
15895145 |
T |
|
| Q |
337 |
tttccaaggaaaattgtctattctatagtaaagttcttccaaccgagacaatcttatcaagatattatcagaaatga |
413 |
Q |
| |
|
|||||||||||||||| || ||| |||||||||||||||||||| ||| ||| ||||||| |||||||||||||| |
|
|
| T |
15895146 |
attccaaggaaaattgtacatcctaaagtaaagttcttccaaccgaaacagtctaatcaagacattatcagaaatga |
15895222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 131329 - 130935
Alignment:
| Q |
18 |
atcaggtgacatttgtggcataacatttttcaaggctttcacatttcttattacgaggatttcacatttcttaatcaattgtgagatcatcaatatgcta |
117 |
Q |
| |
|
|||| |||||| |||| |||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
131329 |
atcatgtgacaattgtctcataacatttttcaagtctttcacctttcttattgcgaggatttcacatttcttaatcaattgtgagatcatcagtatgcta |
131230 |
T |
|
| Q |
118 |
ccaatagattgatagcctataccactaacttgcaataaagttgggtccaaatatgaagatcgttgaagatcagtgtatggatccacataaacccaaaact |
217 |
Q |
| |
|
||||||||||||| ||||| |||||| |||||||||| ||| || |||| || ||| || |||| |||| | || ||||||||| | |||||||| |
|
|
| T |
131229 |
ttaatagattgatagtctatagcactaatttgcaataaatttgactcgaaatgtgcagagcgctgaaaatcactataaatatccacatagatccaaaact |
131130 |
T |
|
| Q |
218 |
tttgcaagtttttgaagtccaaacccttgactaaactttcagcccccctaaatttcatctctaacaacctttagctgatgagatannnnnnncaactcgt |
317 |
Q |
| |
|
|||| | || | ||||||||| |||||| |||| ||||| ||| |||| ||| ||||| || ||||||||||||| ||||| ||||||| |
|
|
| T |
131129 |
tttgtagattgtataagtccaaatccttgattaaaacttcagtccctctaacttttatctc-aaagacctttagctgataagatatcttttttaactcgt |
131031 |
T |
|
| Q |
318 |
tgagcgcaacttcatttcttttccaaggaaaattgtctattctatagtaaagttcttccaaccgagacaatcttatcaagatattatcagaaatga |
413 |
Q |
| |
|
||| ||||| ||||||| |||||||||||||||||| || || | |||||||||||||| ||||||| ||||||||||| |||| |||||||| |
|
|
| T |
131030 |
tgattgcaacctcatttcctttccaaggaaaattgtccatccttaaataaagttcttccaatcgagacagtcttatcaagacattactagaaatga |
130935 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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