View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_344 (Length: 230)
Name: NF6876A_low_344
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_344 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 32853946 - 32854175
Alignment:
| Q |
1 |
ggatattcatctttgcttgaaaaacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaacccatcaattcatattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32853946 |
ggatattcatctttgcttgaaaaacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaacccatcagttcatattg |
32854045 |
T |
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| Q |
101 |
tgagagttttgtgaggtcctttgtttcttcaataacagcaacaacatgttcaaatttttgtggaaggcttctcaatattttctcaaccactttcctttct |
200 |
Q |
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| T |
32854046 |
tgagagttttgtgaggtcctttgtttcttcaataacagcaacaacatgttcaaatttttgtggaaggcttctcaatattttctcaaccactttcctttct |
32854145 |
T |
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| Q |
201 |
ggaacttgttctccacaacttttaatttga |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32854146 |
ggaacttgttctccacaacttttaatttga |
32854175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37177081 - 37177310
Alignment:
| Q |
1 |
ggatattcatctttgcttgaaaaacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaacccatcaattcatattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37177081 |
ggatattcatctttgcttgaaaaacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaacccatcaatttatattg |
37177180 |
T |
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| Q |
101 |
tgagagttttgtgaggtcctttgtttcttcaataacagcaacaacatgttcaaatttttgtggaaggcttctcaatattttctcaaccactttcctttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37177181 |
tgagagttttgtgaggtcctttgtttcttcaataacagcaacaacatgttcaaatttttgtggaaggcttctcaatattttctcaaccactttcttttct |
37177280 |
T |
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| Q |
201 |
ggaacttgttctccacaacttttaatttga |
230 |
Q |
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| T |
37177281 |
ggaacttgttctccacaacttttaatttga |
37177310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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