View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_347 (Length: 230)
Name: NF6876A_low_347
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_347 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 15775979 - 15775750
Alignment:
| Q |
1 |
tcactggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15775979 |
tcactggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggt |
15775880 |
T |
|
| Q |
101 |
agaagtaagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15775879 |
agaagtaagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactg |
15775780 |
T |
|
| Q |
201 |
acttgacgtcatcttagtttgaaaggtgga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15775779 |
acttgacgtcatcttagtttgaaaggtgga |
15775750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 15776032 - 15775968
Alignment:
| Q |
116 |
gggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagatt |
180 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||| |||||| |||| ||||||||| |||| |
|
|
| T |
15776032 |
gggacaaactgttcttggattgaactagccacttatccaaacatggatggaaatcactggggatt |
15775968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 24813131 - 24813360
Alignment:
| Q |
1 |
tcactggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24813131 |
tcactggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggt |
24813230 |
T |
|
| Q |
101 |
agaagtaagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24813231 |
agaagtaagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactg |
24813330 |
T |
|
| Q |
201 |
acttgacgtcatcttagtttgaaaggtgga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
24813331 |
acttgacgtcatcttagtttgaaaggtgga |
24813360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 24813078 - 24813142
Alignment:
| Q |
116 |
gggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagatt |
180 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||| |||| |
|
|
| T |
24813078 |
gggacaagctgttcttggattgaactagccacttatccaaacatggatggaaatcactggggatt |
24813142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3791141 - 3790912
Alignment:
| Q |
1 |
tcactggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3791141 |
tcactggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcataggataacagaggt |
3791042 |
T |
|
| Q |
101 |
agaagtaagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3791041 |
agaagtaagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactg |
3790942 |
T |
|
| Q |
201 |
acttgacgtcatcttagtttgaaaggtgga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3790941 |
acttgacgtcatcttagtttgaaaggtgga |
3790912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 3791194 - 3791130
Alignment:
| Q |
116 |
gggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagatt |
180 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||| |||| |
|
|
| T |
3791194 |
gggacaagctgttcttggattgaactagccacttatccaaacatggatggaaatcactggggatt |
3791130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 13178086 - 13178315
Alignment:
| Q |
1 |
tcactggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13178086 |
tcactggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggt |
13178185 |
T |
|
| Q |
101 |
agaagtaagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13178186 |
agaagtaagttgactgggacaagctgttcttgaactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactg |
13178285 |
T |
|
| Q |
201 |
acttgacgtcatcttagtttgaaaggtgga |
230 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
13178286 |
acttgacatcatcttagtttgaaaggtgga |
13178315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 13178033 - 13178097
Alignment:
| Q |
116 |
gggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagatt |
180 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||| |||| |
|
|
| T |
13178033 |
gggacaagctgttcttggattgaactagccacttatccaaacatggatggaaatcactggggatt |
13178097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 3452655 - 3452541
Alignment:
| Q |
116 |
gggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttgacgtcatctt |
215 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3452655 |
gggacaagctgttcttggattgaactagccacttatccaaacatggatggaaatcactggggattgaaataagaatttgaaactgacttgacgtcatctt |
3452556 |
T |
|
| Q |
216 |
agtttgaaaggtgga |
230 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3452555 |
agtttgaaaggtgga |
3452541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 26267899 - 26268010
Alignment:
| Q |
119 |
acaagctgttcttggact-gaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttgacgtcatcttag |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||| | | | ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26267899 |
acaagctgttcttggacttgaactagccacttgaccgaaca-gaaacatattcactggggattgaaataagaatttgaaactgacttgacgtcatcttag |
26267997 |
T |
|
| Q |
218 |
tttgaaaggtgga |
230 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26267998 |
tttgaaaggtgga |
26268010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University