View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_348 (Length: 230)
Name: NF6876A_low_348
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_348 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 12416333 - 12416555
Alignment:
| Q |
1 |
aaaataactaccaacatatataaaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagacaattcatattccaggaattgtaggtaaa |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
12416333 |
aaaataactaccaacata----aaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagataattcatattccaggaattgtagttaaa |
12416428 |
T |
|
| Q |
101 |
attctttcagaaacttggttttttgccataactgaatagtgaaatttcaccaactgccgtacagttgtagggttagcatttgaaacattctcggatttga |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12416429 |
attctttcagaaacttggttttttgccatagctgaaaagtgaaatttcaccaactgctgtacagttgtagggtaagcatttgaaacattctcggatttga |
12416528 |
T |
|
| Q |
201 |
aaccataatcataagaactattggatg |
227 |
Q |
| |
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|| ||||| ||||||||||||||||| |
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| T |
12416529 |
aatcataagaataagaactattggatg |
12416555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 12428393 - 12428615
Alignment:
| Q |
1 |
aaaataactaccaacatatataaaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagacaattcatattccaggaattgtaggtaaa |
100 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
12428393 |
aaaataactaccaacata----aaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagataattcatattccaggaattgtagttaaa |
12428488 |
T |
|
| Q |
101 |
attctttcagaaacttggttttttgccataactgaatagtgaaatttcaccaactgccgtacagttgtagggttagcatttgaaacattctcggatttga |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12428489 |
attctttcagaaacttggttttttgccatagctgaaaagtgaaatttcaccaactgctgtacagttgtagggtaagcatttgaaacattctcggatttga |
12428588 |
T |
|
| Q |
201 |
aaccataatcataagaactattggatg |
227 |
Q |
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|| ||||| ||||||||||||||||| |
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| T |
12428589 |
aatcataagaataagaactattggatg |
12428615 |
T |
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