View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_349 (Length: 230)
Name: NF6876A_low_349
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_349 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 21078610 - 21078381
Alignment:
| Q |
1 |
tcatcatcatcgtcatcatcaccaccaccaccacgagacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttcttctcacga |
100 |
Q |
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| T |
21078610 |
tcatcatcatcgtcatcatcaccaccaccaccacgagacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttcttctcacga |
21078511 |
T |
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| Q |
101 |
tgctgcgctttttctttttatgggaacttggaggaaaatatttggataagttaataactggtggtgcatcatccacttgaaactgatcaagatcacacat |
200 |
Q |
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| T |
21078510 |
tgctgcgttttttctttttatgggaacttggaggcaaatatttggataagttaataactggtggtgcatcatccacttgaaactgatcaagatcacacat |
21078411 |
T |
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| Q |
201 |
atcactctgttgctccaagaaggagacagg |
230 |
Q |
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| T |
21078410 |
atcactctgttgctccaagaaggagacagg |
21078381 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 3073724 - 3073780
Alignment:
| Q |
36 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttct |
92 |
Q |
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| T |
3073724 |
agacatatcgaagagtgtatatgctccattaagatgttcatgatcaatgatatttct |
3073780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 30617998 - 30618030
Alignment:
| Q |
2 |
catcatcatcgtcatcatcaccaccaccaccac |
34 |
Q |
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| T |
30617998 |
catcatcatcatcatcatcaccaccaccaccac |
30618030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 27732088 - 27732144
Alignment:
| Q |
36 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttct |
92 |
Q |
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|||||||| |||||| | |||||| |||||||| ||||||||||||| |||||||| |
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| T |
27732088 |
agacatattgaagagtgtttgtgctccattaagatgttcatgatcaatgatatttct |
27732144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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