View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_350 (Length: 230)
Name: NF6876A_low_350
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_350 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 28161751 - 28161522
Alignment:
| Q |
1 |
ggccgttgaaaactgcggcactcgggtgctctatagaaaaaagaagtggcacttggttcctccattgtgtcgggattaaggaacacagtgagaccataat |
100 |
Q |
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| T |
28161751 |
ggccgttgaaaactgcggcactcgggtgctctatagaaaaaagaagtggcacttggttcctccattgtgtcgggattaaggaacacagtgagaccataat |
28161652 |
T |
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| Q |
101 |
cagtgagacaggactcaaagtcggcaccaagtaacacattggaagatttcagatttccgtgagccatgccggggttttggtggatatagagaaggcctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28161651 |
cagtgagacaggactcaaagtcggcaccaagtaacacattggaagatttcagatttccatgagccatgccggggttttggtggatatagagaaggcctgt |
28161552 |
T |
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| Q |
201 |
tgctagatcttctgcaattttaagacatga |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28161551 |
tgctagatcttctgcaattttaagacatga |
28161522 |
T |
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