View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_352 (Length: 230)
Name: NF6876A_low_352
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_352 |
 | |
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| [»] scaffold0867 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: scaffold0867 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: scaffold0867
Description:
Target: scaffold0867; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2523 - 2752
Alignment:
| Q |
1 |
ttggggagtattgattgtatgcattgggaatggaaaaattgcccagttgcattgaaagggcaatatgttcgaggtgatcatggtaaacccacggttatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2523 |
ttggggagtattgattgtatgcattgggaatggaaaaattgcccagttgcattgaaagggcaatatgttcgaggtgatcatggtaaacccacggttatgc |
2622 |
T |
|
| Q |
101 |
ttgaagcagttgcttcacaagacttatgggtttggcacgcattctttggggtagcgggttcaaacaacgatatcaatgtgcttaaccaatctgatgtctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2623 |
ttgaagcagttgcttcacaagacttatggatttggcacgcattctttggggtagcgggttcaaacaacgatatcaatgtgcttaaccaatctgatgtctt |
2722 |
T |
|
| Q |
201 |
caacgatgttatgcaaggacgagctcctga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
2723 |
caacgatgttatgcaaggacgagctcctga |
2752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 19792386 - 19792163
Alignment:
| Q |
4 |
gggagtattgattgtatgcattgggaatggaaaaattgcccagttgcattgaaagggcaatatgttcgaggtgatcatggtaaacccacggttatgcttg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
19792386 |
gggagtattgattgtatgcattgggaatggaaaaattgcccagttgcatggaaagggcaatatgttcgaggtgatcatggtaaacccactgttatgcttg |
19792287 |
T |
|
| Q |
104 |
aagcagttgcttcacaagacttatgggtttggcacgcattctttggggtagcgggttcaaacaacgatatcaatgtgcttaaccaatctgatgtcttcaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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|
| T |
19792286 |
aagcagttgcttcacaagacttatggatttggcacgcattctttggggtagcgggttcaaacaacgatatcaatgtgttgaaccaatctgatgtcttcaa |
19792187 |
T |
|
| Q |
204 |
cgatgttatgcaaggacgagctcc |
227 |
Q |
| |
|
|||||||||||| || |||||||| |
|
|
| T |
19792186 |
cgatgttatgcaggggcgagctcc |
19792163 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 8220060 - 8220023
Alignment:
| Q |
4 |
gggagtattgattgtatgcattgggaatggaaaaattg |
41 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
8220060 |
gggagtattgattgcatgcattgggagtggaaaaattg |
8220023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 9681331 - 9681557
Alignment:
| Q |
4 |
gggagtattgattgtatgcattgggaatggaaaaattgcccagttgcattgaaagggcaatatgttcgaggtgatcatggtaaacccacggttatgcttg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9681331 |
gggagtattgattgtatgcattgggaatggaaaaattgcccagttgcatgaaaagggcaatatgttcgaggtgatcatggtaaacccactgttatgcttg |
9681430 |
T |
|
| Q |
104 |
aagcagttgcttcacaagacttatgggtttggcacgcattctttggggtagcgggttcaaacaacgatatcaatgtgcttaaccaatctgatgtcttcaa |
203 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| |
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|
| T |
9681431 |
aagcagttgcttcacaagacctatggatttggcacgcattctttggggtagcgggttcaaacaacgatatcaatgtgttgaaccaacctgatgtcttcaa |
9681530 |
T |
|
| Q |
204 |
cgatgttatgcaaggacgagctcctga |
230 |
Q |
| |
|
| |||||||||| || ||||||||||| |
|
|
| T |
9681531 |
caatgttatgcaggggcgagctcctga |
9681557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 5190313 - 5190545
Alignment:
| Q |
1 |
ttggggagtattgattgtatgcatt----gggaatggaaaaattgcccagttgcattgaaagggcaatatgttcgaggtgatcatggtaaacccacggtt |
96 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| ||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| || |
|
|
| T |
5190313 |
ttggggagtattgattgtatgcattaattgggattggacaaatttcccagttgcattgaaagagcaatatgttcgcggtgatcatggtaaacccacaatt |
5190412 |
T |
|
| Q |
97 |
atgcttgaagcagttgcttcacaagacttatgggtttggcacgcattctttggggtagcgggttcaaacaacgatatcaatgtgcttaaccaatctgatg |
196 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5190413 |
atgcttgaagcagccgcttcacaagacttatggatttggcacacatt-tttggagtagcgggttcaaacaacgatatcaatgtgcttaaccaatctgatg |
5190511 |
T |
|
| Q |
197 |
tcttcaacgatgttatgcaaggacgagctcctga |
230 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| |
|
|
| T |
5190512 |
tcttcaacgatgttatgcaagggcgagctgctga |
5190545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 19730959 - 19730771
Alignment:
| Q |
9 |
tattgattgtatgcattgggaatggaaaaattgcccagttgcattgaaagggcaatatgttcgaggtgatcatggtaaacccacggttatgcttgaagca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| | |||||| |||| | ||||| || ||||||||||| ||| | |||||||||||| |
|
|
| T |
19730959 |
tattgattgtatgcattgggaatggaaaaattgtccggttgcttggaaaggccaattttgccgaggcgaccatggtaaaccaacgatcatgcttgaagca |
19730860 |
T |
|
| Q |
109 |
gttgcttcacaagacttatgggtttggcacgcattctttggggtagcgggttcaaacaacgatatcaatgtgcttaaccaatctgatgt |
197 |
Q |
| |
|
| || ||||||||||| ||| ||||||| ||| | ||||| | || ||||||||||| || || |||||| | ||||||||| |||| |
|
|
| T |
19730859 |
atggcatcacaagacttgtggatttggcatgcactttttggtattgcaggttcaaacaatgacattaatgtgttaaaccaatctaatgt |
19730771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 23561135 - 23560909
Alignment:
| Q |
1 |
ttggggagtattgattgtatgcattgggaatggaaaaattgcccagttgcattgaaagggcaatatgttcgaggtgatcatggtaaacccacggttatgc |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23561135 |
ttgggtagtattgattgtatgcattgggaatggaaaaattgtccagtcgcaatgaaagggcagtatgttcgaggtgatcatggtaaacccactgttatgc |
23561036 |
T |
|
| Q |
101 |
ttgaagcagttgcttcacaagacttatgggtttggcacgcattctttggggtagcgggttcaaacaacgatatcaatgtgcttaaccaatctgatgtctt |
200 |
Q |
| |
|
|||| ||| |||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
23561035 |
ttgaggcaattgcttcacaagacctatggatttggcatgcattctttggggtagctggttcaaacaacgatatcaacgtgttgaaccaatctgatgtctt |
23560936 |
T |
|
| Q |
201 |
caacgatgttatgcaaggacgagctcc |
227 |
Q |
| |
|
||| |||||||||||||| |||||||| |
|
|
| T |
23560935 |
caatgatgttatgcaagggcgagctcc |
23560909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 48264113 - 48263886
Alignment:
| Q |
1 |
ttggggagtattgattgtatgcattgggaatggaaaaattgcccagttgcattgaaagggcaatatgttcgaggtgatcatggtaaacccacggttatgc |
100 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48264113 |
ttgggtagtattgattgtatgcatcgggaatggaaaaattgtccagtcgcattgaaagggcagtatgttcgaggtgatcatggtaaacccactgttatgc |
48264014 |
T |
|
| Q |
101 |
ttgaagcagttgcttcacaagac--ttatgggtttggcacgcattctttggggtagcgggttcaaacaacgatatcaatgtgcttaaccaatctgatgtc |
198 |
Q |
| |
|
|||| ||| |||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||| ||||| | | | ||||||||||||||| |
|
|
| T |
48264013 |
ttgaggcaattgcttcacaagacctctatggatttggcatgcattctttggggtagccggttcaaacaacgaaatcaacgggttgaaccaatctgatgtc |
48263914 |
T |
|
| Q |
199 |
ttcaacgatgttatgcaaggacgagctc |
226 |
Q |
| |
|
||||| |||||| ||||||| ||||||| |
|
|
| T |
48263913 |
ttcaatgatgttgtgcaagggcgagctc |
48263886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 20216277 - 20216348
Alignment:
| Q |
145 |
tttggggtagcgggttcaaacaacgatatcaatgtgcttaaccaatctgatgtcttcaacgatgttatgcaa |
216 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| | |||||||| |||| |||||| ||||||||||| |
|
|
| T |
20216277 |
tttgggatggcgggttcaaacaacgatatcaatgttatgcaccaatctaatgtattcaacaatgttatgcaa |
20216348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 16681018 - 16680788
Alignment:
| Q |
1 |
ttggggagtattgattgtatgcatt-gggaatggaaaaattgcccagttgcattgaaagggcaatatgttcgaggtgatcatggtaaacccacggttatg |
99 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
16681018 |
ttggggagtattgattgtatgcatttgggaatgaaaaaattgcccagttgcattgaaagggaaaaatgtttgaggtgatcatggtaaacccactattatg |
16680919 |
T |
|
| Q |
100 |
cttgaagcagttgcttcacaagacttatgggtttggcacgcattctttggggtagcgggttcaaacaacgatatcaatgtgcttaaccaatctgatgtct |
199 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||||||| || |||||||||||||| ||||||| |||| ||| |
|
|
| T |
16680918 |
cttgaagcagttgcttcacaagaattatggatttggcacgcaatctttggggtagcgagttcaaaaaatgatatcaatgtgctgaaccaatatgatttct |
16680819 |
T |
|
| Q |
200 |
tcaacgatgttatgcaaggacgagctcctga |
230 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| |
|
|
| T |
16680818 |
tcaacgatggtatgcaagggcgagctcctga |
16680788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 46822716 - 46822830
Alignment:
| Q |
116 |
cacaagacttatgggtttggcacgcattctttggggtagcgggttcaaacaacgatatcaatgtgcttaaccaatctgatgtcttcaacgatgttatgca |
215 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||| |
|
|
| T |
46822716 |
cacaagacctatggatttggcacgcattctttggggtagcgggttcaaacaacgatatcaatgtgttgaaccaatctgatgtcttcaacaatgttatgca |
46822815 |
T |
|
| Q |
216 |
aggacgagctcctga |
230 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
46822816 |
ggggcgagctcctga |
46822830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 2952638 - 2952425
Alignment:
| Q |
4 |
gggagtattgattgtatgcattgggaatggaaaaattgcccagttgcattgaaagggcaatatgttcgaggtgatcatggtaaacccacggttatgcttg |
103 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| |||| | || || |||||||||||||| | ||||||| ||| |||||||| |||||| | | |
|
|
| T |
2952638 |
gggagtattgattgtatgcattaggaatgaaaatattgtctccttagatcgaaagggcaatatgcttaaggtgat-atgctaaacccaaagttatgttcg |
2952540 |
T |
|
| Q |
104 |
aa-gcagttgcttcacaagacttatgggtttggcacgcattctttggggtagcgggttcaaacaacgatatcaatgtgcttaaccaatctga-tgtcttc |
201 |
Q |
| |
|
|| | ||| ||||||||||||||||| ||||| || |||||||||| ||||||||||||||||| |||||| |||| ||||||||| | ||| ||| |
|
|
| T |
2952539 |
aaagtagtggcttcacaagacttatgaatttggtacacattctttggagtagcgggttcaaacaaaaatatcaggatgctgaaccaatctaattgttttc |
2952440 |
T |
|
| Q |
202 |
aacgatgttatgcaag |
217 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
2952439 |
aa-gatgttatgcaag |
2952425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 5313445 - 5313305
Alignment:
| Q |
10 |
attgattgtatgcattgggaatggaaaaattgcccagttgcattgaaagggcaatatgttcgaggtgatcatggtaaa-cccacggttatgcttgaagca |
108 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| ||||| | || | | || | | ||||||||||||||||||| |||||| | |||||||||||| |
|
|
| T |
5313445 |
attgattgtatgcattgggaatggaaatagtgcctggttgcttggacatgccagttttgtcgaggtgatcatggtaaaacccacgatcatgcttgaagca |
5313346 |
T |
|
| Q |
109 |
gttgcttcacaagacttatgggtttggcacgcattctttgg |
149 |
Q |
| |
|
| || ||||||||||| ||| |||| || ||||| ||||| |
|
|
| T |
5313345 |
gcggcatcacaagacttgtggatttgacatgcattttttgg |
5313305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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