View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_353 (Length: 230)
Name: NF6876A_low_353
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_353 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 53633353 - 53633124
Alignment:
| Q |
1 |
tcatgttccggcaatacgtgtgattgaaaacatatcctaatgtcttgtaactagcatctacaaatgtctctacctatgtcgcttacaaagaaagcctatg |
100 |
Q |
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| T |
53633353 |
tcatgttccggcaatacgtgtaattgaaaacatatcctaatgtcttgtaactagcatctacaaatatctctacccatgtcgcttacaaagaaagcctatg |
53633254 |
T |
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| Q |
101 |
tctaccactccctaatcaaaaggtcaattttaggttacacgacgnnnnnnncattaaatgaagaaataagatatcgataaaatgaaatatgaattagata |
200 |
Q |
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| T |
53633253 |
tctaccactccctaatcaaaaggtcaattttaggttacacgacgaaaaaaacattaaatgtagaaataagatatcgataaaatgaaatatgaattagata |
53633154 |
T |
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| Q |
201 |
taattagccatatcaagtatttacattaga |
230 |
Q |
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| T |
53633153 |
taattagccatatcaagtatttacattaga |
53633124 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 20166758 - 20166843
Alignment:
| Q |
49 |
aactagcatctacaaatgtctctacctatgtcgcttacaaagaaagcctatgtctaccactccctaa-tcaaaaggtcaattttag |
133 |
Q |
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| T |
20166758 |
aactagcatctacaaatgtctttatccatatcctttataaaggaagtctatgtctagcattccctaagtcaaaagatcaattttag |
20166843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 32189767 - 32189832
Alignment:
| Q |
36 |
cctaatgtcttgtaactagcatctacaaatgtctctacctatgtcgcttacaaagaaagcctatgt |
101 |
Q |
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| T |
32189767 |
cctaatgtcttgaaattagcatctacaaatgcctctattcatgtgacttacaaagaaagtctatgt |
32189832 |
T |
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