View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_358 (Length: 230)

Name: NF6876A_low_358
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_358
NF6876A_low_358
[»] chr4 (5 HSPs)
chr4 (1-230)||(13214613-13214841)
chr4 (9-125)||(23821981-23822098)
chr4 (31-139)||(32602048-32602157)
chr4 (28-138)||(20233349-20233458)
chr4 (98-139)||(30065027-30065068)
[»] chr1 (4 HSPs)
chr1 (7-166)||(2199194-2199353)
chr1 (36-115)||(45227935-45228014)
chr1 (33-85)||(37504371-37504423)
chr1 (31-137)||(50657680-50657786)
[»] chr5 (3 HSPs)
chr5 (7-165)||(10110824-10110982)
chr5 (72-120)||(14628835-14628884)
chr5 (7-50)||(14628786-14628829)
[»] chr3 (2 HSPs)
chr3 (7-165)||(28762138-28762296)
chr3 (29-123)||(50229830-50229922)
[»] scaffold0103 (1 HSPs)
scaffold0103 (7-167)||(29907-30065)
[»] chr2 (2 HSPs)
chr2 (7-167)||(33712369-33712527)
chr2 (11-164)||(8335593-8335744)
[»] chr7 (3 HSPs)
chr7 (7-69)||(36937056-36937118)
chr7 (31-94)||(25614161-25614224)
chr7 (96-139)||(36937120-36937163)
[»] chr8 (4 HSPs)
chr8 (31-133)||(30029025-30029128)
chr8 (8-70)||(3471084-3471146)
chr8 (30-94)||(3942815-3942879)
chr8 (34-139)||(40554972-40555079)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 13214613 - 13214841
Alignment:
Q  1 tcaaataatcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataagagagagaaacaactaattaaaaatgatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  13214613 tcaaataatcaacaacttttggacaagtagtataaaaatacatcaattataactattaatgtgactataagagagagaaacaactaattaaaaatgatat 13214712  T
Q  101 agtatctatacggtatagatatacgatgttggacaaccacaatgttgccaaatatatcatttctcttgttttaacatgtggaacatgttagacaaaccct 200  Q
    ||||||||| ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  13214713 agtatctatgcggtatagatatacgatattggacaaccaaaatgttgtcaaatatatcatttctcttgttttaacatgtgcaacatgttagac-aaccct 13214811  T
Q  201 tagaataaaactacttgtgacatgcaattg 230  Q
    ||||||||||||||||||||||||||||||    
T  13214812 tagaataaaactacttgtgacatgcaattg 13214841  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 23822098 - 23821981
Alignment:
Q  9 tcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataagagagagaaacaactaattaaaaa-tgatatagtatct 107  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||    
T  23822098 tcaacaacttttgaacaactagtataaaaatacatcaattataactattgatgtgactataagagagagaaacaactaattaaaaagtgacatagtatct 23821999  T
Q  108 atacggtatagatatacg 125  Q
    ||||| ||||||||||||    
T  23821998 atacgatatagatatacg 23821981  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 32602157 - 32602048
Alignment:
Q  31 tataaaaatacatcaattataactattgatatgactataagagagagaaacaactaatta-aaaatgatatagtatctatacggtatagatatacgatgt 129  Q
    ||||||||||||||| ||||||| | |||| |||||||| |||||||||  ||||||||| ||||||||||| ||  |||||  |||| ||||||| |||    
T  32602157 tataaaaatacatcatttataacgaatgatgtgactatatgagagagaagtaactaattaaaaaatgatatattacttatacaatataaatatacgttgt 32602058  T
Q  130 tggacaacca 139  Q
    ||||||||||    
T  32602057 tggacaacca 32602048  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 20233349 - 20233458
Alignment:
Q  28 tagtataaaaatacatcaattataactattgatatgactataagagagagaaacaactaatta-aaaatgatatagtatctatacggtatagatatacga 126  Q
    ||||||||||||| |||  |||||||| ||||| ||||||||| |||||  |  || |||||| ||||||| ||||||||||||  |||||||||||||     
T  20233349 tagtataaaaatatatcttttataactgttgatgtgactataaaagaga--attaattaattacaaaatgaaatagtatctatatagtatagatatacgt 20233446  T
Q  127 tgttggacaacc 138  Q
    ||||||||||||    
T  20233447 tgttggacaacc 20233458  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 30065027 - 30065068
Alignment:
Q  98 tatagtatctatacggtatagatatacgatgttggacaacca 139  Q
    |||||||||||||| ||||||||||| | |||||||||||||    
T  30065027 tatagtatctatacagtatagatataagttgttggacaacca 30065068  T

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Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 7 - 166
Target Start/End: Original strand, 2199194 - 2199353
Alignment:
Q  7 aatcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataagagagagaaacaactaatt-aaaaatgatatagtat 105  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||  ||||||    
T  2199194 aatcaacaacttttggacaactagtataaaaatacatcaattataactattgatgtgactataagagagagaaacaactaattaaaaaatgacgtagtat 2199293  T
Q  106 ctatacggtatagatatacgatgttggacaaccacaatgttgccaaatatatcatttctct 166  Q
    |||||||||||||||||||||||||||||||||| || |||| | ||||||||||||||||    
T  2199294 ctatacggtatagatatacgatgttggacaaccaaaaggttgtc-aatatatcatttctct 2199353  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 45227935 - 45228014
Alignment:
Q  36 aaatacatcaattataactattgatatgactataagagagagaaacaactaattaaaaatgatatagtatctatacggta 115  Q
    |||||||||| |||| |||||| || ||||||||||||||| |||||  ||||||||||  | |||||||||||| ||||    
T  45227935 aaatacatcatttattactattaatgtgactataagagagataaacagttaattaaaaaaaaaatagtatctatatggta 45228014  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 37504371 - 37504423
Alignment:
Q  33 taaaaatacatcaattataactattgatatgactataagagagagaaacaact 85  Q
    ||||||||||||| |||||| ||||||| ||||||||| ||||| ||||||||    
T  37504371 taaaaatacatcatttataattattgatgtgactataaaagagataaacaact 37504423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 50657680 - 50657786
Alignment:
Q  31 tataaaaatacatcaatt-ataactattgatatgactataagagagagaaacaactaatt-aaaaatgatatagtatctatacggtatagatatacgatg 128  Q
    |||||||||||| ||||| |||||||| ||| |||||| |||||||||||| || ||||| |||||||| ||||||| |||||  |||| ||||| | ||    
T  50657680 tataaaaataca-caattcataactatcgatgtgactagaagagagagaaataagtaattaaaaaatgaaatagtatttatac-atataaatatatggtg 50657777  T
Q  129 ttggacaac 137  Q
    |||||||||    
T  50657778 ttggacaac 50657786  T

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Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 10110982 - 10110824
Alignment:
Q  7 aatcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataagagagagaaacaactaatta-aaaatgatatagtat 105  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||    
T  10110982 aatcaacaacttttgaacaactagtataaaaatacatcaattataactattgatgtgactataagagagagaaacaactaattaaaaaatgacatagtat 10110883  T
Q  106 ctatacggtatagatatacgatgttggacaaccacaatgttgccaaatatatcatttctc 165  Q
    |||||||||||||||||||||||||||||||||| || |||| | |||||||||||||||    
T  10110882 ctatacggtatagatatacgatgttggacaaccaaaaggttgtc-aatatatcatttctc 10110824  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 14628835 - 14628884
Alignment:
Q  72 agagagaaacaactaattaaaa-atgatatagtatctatacggtatagat 120  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  14628835 agagagaaacaactaattaaaaaatgatatagtatctatacagtatagat 14628884  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 14628786 - 14628829
Alignment:
Q  7 aatcaacaacttttggacaagtagtataaaaatacatcaattat 50  Q
    ||||||||| |||||||||| || ||||||||||||||||||||    
T  14628786 aatcaacaatttttggacaactaatataaaaatacatcaattat 14628829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 28762296 - 28762138
Alignment:
Q  7 aatcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataagagagagaaacaactaatta-aaaatgatatagtat 105  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||    
T  28762296 aatcaacaacttttgaacaactagtataaaaatacatcaattataactattgatgtgattataagagagagaaacaactaattaaaaaataatatagtat 28762197  T
Q  106 ctatacggtatagatatacgatgttggacaaccacaatgttgccaaatatatcatttctc 165  Q
    |||||||||||||||||||||||||||||||||| || |||| | ||||||| |||||||    
T  28762196 ctatacggtatagatatacgatgttggacaaccaaaaggttgtc-aatatataatttctc 28762138  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 50229830 - 50229922
Alignment:
Q  29 agtataaaaatacatcaattataactattgatatgactataagagagagaaacaactaattaaaaatgatatagtatctatacggtatagatata 123  Q
    ||||||||||||||  | ||||||||| ||||||||| |||  ||||||||| || ||||||||||||| ||||||  ||||||||||| |||||    
T  50229830 agtataaaaatacacaatttataactaatgatatgaccata--agagagaaataagtaattaaaaatgaaatagtacttatacggtatacatata 50229922  T

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Target: scaffold0103 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 167
Target Start/End: Complemental strand, 30065 - 29907
Alignment:
Q  7 aatcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataagagagagaaacaactaatt-aaaaatgatatagtat 105  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||| |||||| ||||| |||    
T  30065 aatcaacaacttttggacaactagtataaaaatacatcaattataactattgatgtgactataaga--gagaaacaactaattaaaaaattatatattat 29968  T
Q  106 ctatacggtatagatatacgatgttggacaaccacaatgttgccaaatatatcatttctctt 167  Q
    ||||| |||||||||||||||||||||||||||| || |||| | |||||||||||||||||    
T  29967 ctatatggtatagatatacgatgttggacaaccaaaaggttgtc-aatatatcatttctctt 29907  T

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Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 167
Target Start/End: Complemental strand, 33712527 - 33712369
Alignment:
Q  7 aatcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataagagagagaaacaactaattaaaaa-tgatatagtat 105  Q
    |||||| || |||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||  |||||||||||||||| |||||||||||    
T  33712527 aatcaataatttttggacaactagtataaaaatacatcaattataactattgatgtgaccataagcgaga--aacaactaattaaaaaatgatatagtat 33712430  T
Q  106 ctatacggtatagatatacgatgttggacaaccacaatgttgccaaatatatcatttctctt 167  Q
    |||||| ||||||||||||||||||||||||||| || |||| | |||||||||||||||||    
T  33712429 ctatacagtatagatatacgatgttggacaaccaaaaggttgtc-aatatatcatttctctt 33712369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 8335744 - 8335593
Alignment:
Q  11 aacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataagagagagaaacaactaatt-aaaaatgatatagtatctat 109  Q
    ||||| |||||||||| | ||||||||||||||||||||||||||||||| |||| |||  |||||||||||||||||| ||||||||||||||||||||    
T  8335744 aacaatttttggacaacttgtataaaaatacatcaattataactattgatgtgaccata--agagagaaacaactaattaaaaaatgatatagtatctat 8335647  T
Q  110 acggtatagatatacgatgttggacaaccacaatgttgccaaatatatcatttct 164  Q
    || ||||||||||||||||||||||||| | || |||| | ||||||||||||||    
T  8335646 acagtatagatatacgatgttggacaactaaaaggttgtc-aatatatcatttct 8335593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 36937056 - 36937118
Alignment:
Q  7 aatcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactata 69  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  36937056 aatcaacaacttttggacaactagtttaaaaatacatcaattataactattgatatgactata 36937118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 25614161 - 25614224
Alignment:
Q  31 tataaaaatacatcaattataactattgatatgactataagagagagaaacaactaattaaaaa 94  Q
    ||||||||||||  | ||||||||| |||| ||||||||| ||||||||| || ||||||||||    
T  25614161 tataaaaatacacaatttataactaatgatgtgactataatagagagaaataagtaattaaaaa 25614224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 139
Target Start/End: Original strand, 36937120 - 36937163
Alignment:
Q  96 gatatagtatctatacggtatagatatacgatgttggacaacca 139  Q
    ||||||||||||||||  |||||||||||||||||||| |||||    
T  36937120 gatatagtatctatacaatatagatatacgatgttggataacca 36937163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 30029128 - 30029025
Alignment:
Q  31 tataaaaatacatcaattataactattgatatgactataagagagagaaacaactaatta-aaaatgatatagtatctatacggtatagatatacgatgt 129  Q
    ||||||||||||| | |||||||||||||  |||||||| | |||||||| ||||||||| ||||| | ||||||| ||||| ||||| ||||||| |||    
T  30029128 tataaaaatacattatttataactattgacgtgactatatgcgagagaaataactaattaaaaaataaaatagtatttatacagtataaatatacgttgt 30029029  T
Q  130 tgga 133  Q
    ||||    
T  30029028 tgga 30029025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 3471146 - 3471084
Alignment:
Q  8 atcaacaacttttggacaagtagtataaaaatacatcaattataactattgatatgactataa 70  Q
    |||||||||| | |||||| || |||||||||||| ||||||||||||||||| ||| |||||    
T  3471146 atcaacaactatgggacaattaatataaaaatacagcaattataactattgatgtgaatataa 3471084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 3942879 - 3942815
Alignment:
Q  30 gtataaaaatacatcaattataactattgatatgactataagagagagaaacaactaattaaaaa 94  Q
    ||||||||||| || | | ||| |||||||| ||| ||||||||||||||| ||||||| |||||    
T  3942879 gtataaaaatatataattaatagctattgatgtgaatataagagagagaaataactaataaaaaa 3942815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 40555079 - 40554972
Alignment:
Q  34 aaaaatacatcaattataactattgatatgactataagagagagaaacaactaatt--aaaaatgatatagtatctatacggtatagatatacgatgttg 131  Q
    |||| ||||| | ||||||||| |||| | ||||||| | ||||||| || |||||  |||||| | ||||||| ||||||||||| ||||| | |||||    
T  40555079 aaaattacataatttataactaatgatgtaactataaaaaagagaaataaataatttaaaaaataaaatagtatttatacggtataaatatatgttgttg 40554980  T
Q  132 gacaacca 139  Q
     |||||||    
T  40554979 aacaacca 40554972  T

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