View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_361 (Length: 229)
Name: NF6876A_low_361
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_361 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 32869175 - 32869402
Alignment:
| Q |
1 |
acacaaaaccaac-atttggcatggacaacttattttttgacgggtataccaatacttcacatgatataattcagtttaaaactgagtagcaatacaatg |
99 |
Q |
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| T |
32869175 |
acacaaaaccaaccatttggcatg-acaacttattttttgacgggtataccaatacttcacatgatataattcagtttaaaactgagtagcaatacaatg |
32869273 |
T |
|
| Q |
100 |
aattacttttcactagatatcaacactcaaagca-catatgcctaagtaataatctctataagagattaagagtcactactatactatagtatatatgca |
198 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32869274 |
aattacttttcactagatatcaacactcaaagcaccatatgcctaagtaataatctctataagagattaagagtcactactatactatagtatatatgca |
32869373 |
T |
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| Q |
199 |
ggatttcactaatgcaaaatattttcact |
227 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32869374 |
ggatttcactaatgcaaaatattttcact |
32869402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 64 - 191
Target Start/End: Original strand, 26650305 - 26650422
Alignment:
| Q |
64 |
atataattcagtttaaaactgagtagcaatacaatgaattacttttcactagatatcaacactcaaagcacatatgcctaagtaataatctctataagag |
163 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| || | |
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| T |
26650305 |
atataattcagtttaaaactcagtagcaatacaatgaattacctttcactagatatcaacactcaaagcacatatacctaagtaatgat----------g |
26650394 |
T |
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| Q |
164 |
attaagagtcactactatactatagtat |
191 |
Q |
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| T |
26650395 |
attaagagtcactactatactatagtat |
26650422 |
T |
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