View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_363 (Length: 229)
Name: NF6876A_low_363
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_363 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5014422 - 5014185
Alignment:
| Q |
1 |
taagatatgattaatatataaaatgtgtaaaataaagtggtaatatgaagatgattagctttgaacattatttattgtagtttattgtacaaaacaatta |
100 |
Q |
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| T |
5014422 |
taagatatgattaatatgtaaaatgtgtaaaataaagtggtaatatgaagatgattagctttgaacattatttattgtagtttattgtaccaaacaataa |
5014323 |
T |
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| Q |
101 |
tataatcttgacatttttcatnnnnnnncacttagggtttgatttgtgtataaccgtgagtgtc----------taatggtgtttatggttatgttttga |
190 |
Q |
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| T |
5014322 |
tataatgttgacatttttcataaaaaaacacttagggtttgatttgtgtataaccgtgagtgtctaatggtatttaatggtgtttatggttatgttttga |
5014223 |
T |
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| Q |
191 |
tcagatggaagcaaaggcaactttgattttgcatcatg |
228 |
Q |
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| T |
5014222 |
tcagatggaagcaaaggcaactttgattttgcatcatg |
5014185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 41779851 - 41779614
Alignment:
| Q |
1 |
taagatatgattaatatataaaatgtgtaaaataaagtggtaatatgaagatgattagctttgaacattatttattgtagtttattgtacaaaacaatta |
100 |
Q |
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| T |
41779851 |
taagatatgattaatatgtaaaatgtgtaaaataaagtggtaatatgaagatgattagctttgaacattatttattgtagtttattgtaccaaacaataa |
41779752 |
T |
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| Q |
101 |
tataatcttgacatttttcatnnnnnnncacttagggtttgatttgtgtataaccgtgagtgtc----------taatggtgtttatggttatgttttga |
190 |
Q |
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| T |
41779751 |
tataatgttgacatttttcataaaaaaacacttagggtttgatttgtgtataaccgtgagtgtctaatggtttttaatggtgtttatggttatgttttga |
41779652 |
T |
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| Q |
191 |
tcagatggaagcaaaggcaactttgattttgcatcatg |
228 |
Q |
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| T |
41779651 |
tcagatggaagcaaaggcaactttgattttgcatcatg |
41779614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 35299035 - 35299246
Alignment:
| Q |
26 |
tgtaaaataaagtggtaatatgaagatgattagctttgaacattatttattgtagtttattgtacaaaacaattatataatcttgacatttttcatnnnn |
125 |
Q |
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| T |
35299035 |
tgtaaaataaagtggtaatatgaagatgattagctttgaacattatttattgtagtttattgtacaaaacaattatataatcttgacatttttcat-aaa |
35299133 |
T |
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| Q |
126 |
nnncacttagggtttgatttgtgtataaccgtgagtgtc----------taatggtgtttatggttatgttttgatcagatggaagcaaaggcaactttg |
215 |
Q |
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| T |
35299134 |
aaacacttagggtttgatttgtgtataaccgtgagtgtctaatggtgtttaatggtgtttatggttatgttttgatcagatggaagcaaaggcaactttg |
35299233 |
T |
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| Q |
216 |
attttgcatcatg |
228 |
Q |
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||||||||||||| |
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| T |
35299234 |
attttgcatcatg |
35299246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 33062023 - 33062092
Alignment:
| Q |
22 |
aatgtgtaaaataaagtggtaatatgaagatgattagctttgaacattatttattgtagtttattgtaca |
91 |
Q |
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| T |
33062023 |
aatgtgtaaaataaagtgttaatatgaagatgattagctttgaaaattatttattgtagtttattgtaca |
33062092 |
T |
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