View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_372 (Length: 229)
Name: NF6876A_low_372
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_372 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 19840931 - 19841132
Alignment:
| Q |
16 |
catcagcataaattggtattagacattacagatcaaaagaatggagattcacctcataagaaaaataagcttcagagctcaatcaacagaaaaattcatt |
115 |
Q |
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| T |
19840931 |
catcagcataaattggtattagacattacagatcaaaagaatggagattcatctcataagaaaaataagcttcagagctcaatcaacagaaaaattcatt |
19841030 |
T |
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| Q |
116 |
agggttcatgttcgattaacagataaaagataggcaactgtgtacataattgtcataattatagacaatagcaccaactaattgtgtagccaacaccaaa |
215 |
Q |
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| T |
19841031 |
agggttcatgttcgattaacagataaaagataggcaactgtgtacataattgtcataattatagacaatagcaccgactaattgtgtagccaactccaaa |
19841130 |
T |
|
| Q |
216 |
ct |
217 |
Q |
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|| |
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| T |
19841131 |
ct |
19841132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 19958876 - 19958999
Alignment:
| Q |
25 |
aaattggtattagacattacagatcaaaagaatggagattcacctcataagaaaaataagcttcagagctcaatcaacagaaaaattcattagggttcat |
124 |
Q |
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|||||||||||||| || |||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| |
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| T |
19958876 |
aaattggtattagaaatcacagatgaaaggaatgaagattcatctcataagaaaaataagcttcagagctcaattgagagaaaaattcattagagttcat |
19958975 |
T |
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| Q |
125 |
gttcgattaacagataaaagatag |
148 |
Q |
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||| |||||| |||||||||||| |
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| T |
19958976 |
gtttgattaattgataaaagatag |
19958999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 20030928 - 20030800
Alignment:
| Q |
32 |
tattagacattacagatcaaaagaatggagattcacctcataagaaaaataagcttcagagctcaatcaacagaaaaattcattagggttcatgttcgat |
131 |
Q |
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||||||| || |||||| ||| ||||| ||||||| | |||||||||||||||||||| ||||||||| | ||||||||||||||| ||||||||| ||| |
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| T |
20030928 |
tattagaaatcacagatgaaaggaatgaagattcatcgcataagaaaaataagcttca-agctcaatcgagagaaaaattcattagagttcatgtttgat |
20030830 |
T |
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| Q |
132 |
taacagataaaagataggcaactgtgtaca |
161 |
Q |
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||| |||||||||||| ||| |||||||| |
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| T |
20030829 |
taattgataaaagatagtcaattgtgtaca |
20030800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 19851461 - 19851552
Alignment:
| Q |
19 |
cagcataaattggtattagacattaca-gatcaaaagaatggagattcacctcataagaaaaataagcttcagagctcaatcaacagaaaaa |
109 |
Q |
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||||| |||||||||||| | || ||| ||||||| | ||| ||||||| |||| ||||||| ||||||| ||||||||||||| ||||||| |
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| T |
19851461 |
cagcacaaattggtattacaaatcacatgatcaaagggatgaagattcatctcagaagaaaagtaagctttagagctcaatcaagagaaaaa |
19851552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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