View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_374 (Length: 229)
Name: NF6876A_low_374
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_374 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 43032255 - 43032051
Alignment:
| Q |
1 |
tcagtataagcggtggaattaattaatagcacggctaaaagatcgcaagtcaccttatttgtttgtcgctcattaaactcaacctgtgagttcttaaagg |
100 |
Q |
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|||||||||| ||||||| || | ||||| |||||||||||| ||||||||||||||||||||| | |||||||||||||| ||||||||||||||| |
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| T |
43032255 |
tcagtataagtggtggaactagctgatagcgcggctaaaagattacaagtcaccttatttgtttgttgttcattaaactcaacttgtgagttcttaaagt |
43032156 |
T |
|
| Q |
101 |
gagaggcaaaaatattctttgaaggtatcataccatggacaaactccactagcaatgtctttttctctgtgtagcttttcctccactctcaccaccacaa |
200 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
43032155 |
gagaggcaaaaatattctttgaagttatcataacatggacaaactccactagcaatgtctttctctctgtgtagcttttcctccactctcaccaccacca |
43032056 |
T |
|
| Q |
201 |
caaca |
205 |
Q |
| |
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||||| |
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| T |
43032055 |
caaca |
43032051 |
T |
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