View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_376 (Length: 229)
Name: NF6876A_low_376
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_376 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 30841487 - 30841261
Alignment:
| Q |
1 |
gcggtgcaagtaagtgtaagtggatgaaaaagtttatgtttgacggggggtatgatgaattgatgagctcacacctggagagaagattgttgtgtaacaa |
100 |
Q |
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| T |
30841487 |
gcggtgcaagtaagtgtaagtggatgaaaaagtttatgtttgacggggggtatgatgaattgatgagcttacacctggagagaagattgtagtgtaacaa |
30841388 |
T |
|
| Q |
101 |
gcgtgagttggaagttgcaagtatgagttagacttagaagtat-acattacttagaaaagtgaaggtagagcacttataaataagattactcataaacct |
199 |
Q |
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| T |
30841387 |
ccgtgagttggaagttgcaagtatgagttagacttagaagtataacattacttagaaaagtgaaggttgaacacttataaataagatgactcataaacct |
30841288 |
T |
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| Q |
200 |
annnnnnnaaggttttgggtaaagatg |
226 |
Q |
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| T |
30841287 |
atttttttaaggttttgggtaaagatg |
30841261 |
T |
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