View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_378 (Length: 228)
Name: NF6876A_low_378
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_378 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 2896984 - 2896811
Alignment:
| Q |
18 |
aatattatattatgtagagaaggactatttgtatcaaatcgtgtagtgtgtttggctgattgattcgattctggttgtgtcgatggtaaaataaggttga |
117 |
Q |
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| T |
2896984 |
aatattatattatgtagagaaggactatttgtatcaaatcgtgtagtgtgtttggctgattgattggattctggttgtgtcgatggtaaaataaggttga |
2896885 |
T |
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| Q |
118 |
gttttattttccctattgcactaatttgactgaactaatatttaagatcagagaggcccttttaatgggatctt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2896884 |
gttttattttccctattgcactaatttgactgaactaatatttaagatcagagaggcccttttaatgggatctt |
2896811 |
T |
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