View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_38 (Length: 423)
Name: NF6876A_low_38
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 42529921 - 42529527
Alignment:
| Q |
17 |
acatcaaggcagtgagatgaaacccaaaactttaatcaaattatcacaaaggtatcaacatgtcaaccacacccatgaccataatactactcatatatag |
116 |
Q |
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| T |
42529921 |
acatcaaggcagtgagatgaaacccaaaactttaatcaaattatcacaaaggtatcaacatgtcaaccacacccatgaccataatactactcatatatag |
42529822 |
T |
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| Q |
117 |
ctcaataatgaaacccctataaattagctggaataatagctgcgagtagcagaatatataatcaaaagaaatgtctaatcagttaattcatatcatttag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42529821 |
ctcaataatgaaacccctataaattagctggaataatagctgcaagtagcagaatatataatcgaaagaaatgtctaatcagttaattcatatcatttag |
42529722 |
T |
|
| Q |
217 |
gggtgtggggaagtgatgttaatcaaccagtaatagttatggcagcagatggagaatgtatgaacatgtagatgataaattaactgtcaataactagaag |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42529721 |
gggtgtggggaagtgatgttgatcaaccagtaatagttatggcagcagatggagaatgtatgaacatgtagatgataaattaactgtcaataactagaag |
42529622 |
T |
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| Q |
317 |
ctagttgaaatactgctagaacatataattggttcaaattggaaggtatggaggcgtgctaattctataacaatgggctggaggtttgatgtcca |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42529621 |
ctagttgaaatactgctagaacatataattggttcaaattggaaggtatggaggcgtgctaattctataacaatgggctagaggtttgatgtcca |
42529527 |
T |
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