View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_384 (Length: 227)

Name: NF6876A_low_384
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_384
NF6876A_low_384
[»] chr1 (2 HSPs)
chr1 (26-164)||(49331231-49331371)
chr1 (62-163)||(16887067-16887168)
[»] chr3 (1 HSPs)
chr3 (31-163)||(21486854-21486988)
[»] chr8 (2 HSPs)
chr8 (50-163)||(16722209-16722322)
chr8 (90-163)||(40545861-40545934)
[»] chr7 (1 HSPs)
chr7 (50-163)||(21585499-21585610)
[»] chr2 (2 HSPs)
chr2 (62-163)||(23469779-23469879)
chr2 (51-162)||(29799203-29799315)
[»] chr6 (1 HSPs)
chr6 (50-163)||(22724833-22724943)
[»] chr4 (1 HSPs)
chr4 (68-163)||(5506019-5506114)


Alignment Details
Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 49331371 - 49331231
Alignment:
Q  26 ctatgtgaagtgatcgttgtttga--gtgagtttacaatttaccaaaatctaatctcaattttcttaattgagattttactaattcaattttctcacaat 123  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  49331371 ctatgtgaagtgatcgttgtttgactgtgagtttacaatttaccaaaatataatctcaattttcttaattgagattttaccaattcaattttctcccaat 49331272  T
Q  124 taaagttgaaagttaactttaaacaattacttcatataccc 164  Q
     |||||||||| ||||||| |||||||||||||||||||||    
T  49331271 caaagttgaaaattaacttcaaacaattacttcatataccc 49331231  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 16887067 - 16887168
Alignment:
Q  62 tttaccaaaatctaatctcaattttcttaattgagattttactaattcaattttctcacaattaaagttgaaagttaactttaaacaattacttcatata 161  Q
    |||||||||||||||||| |||||||||||||||||||||   |||| ||||||||| |||| |||||||||||||||||| ||| || |  ||||||||    
T  16887067 tttaccaaaatctaatcttaattttcttaattgagattttctcaatttaattttctcgcaatgaaagttgaaagttaacttcaaataaatgattcatata 16887166  T
Q  162 cc 163  Q
    ||    
T  16887167 cc 16887168  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 31 - 163
Target Start/End: Complemental strand, 21486988 - 21486854
Alignment:
Q  31 tgaagtgatcgttgtttga--gtgagtttacaatttaccaaaatctaatctcaattttcttaattgagattttactaattcaattttctcacaattaaag 128  Q
    |||||||||| || |||||  |||| ||||||||||||  ||| |||||||||||||||||||||||||||| ||  |||||||||||||||||| ||||    
T  21486988 tgaagtgatcattatttgattgtgaatttacaatttactgaaacctaatctcaattttcttaattgagatttcaccgattcaattttctcacaatcaaag 21486889  T
Q  129 ttgaaagttaactttaaacaattacttcatatacc 163  Q
    || ||||||||||| ||||||||||||||||||||    
T  21486888 ttaaaagttaacttcaaacaattacttcatatacc 21486854  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 16722209 - 16722322
Alignment:
Q  50 gtgagtttacaatttaccaaaatctaatctcaattttcttaattgagattttactaattcaattttctcacaattaaagttgaaagttaactttaaacaa 149  Q
    |||||||||||| |||| |||| | ||||||||||||||||||||| |||||||  ||| |||||||||| ||| |||||||||||||||||| ||||||    
T  16722209 gtgagtttacaagttacaaaaacccaatctcaattttcttaattgaaattttaccgattaaattttctcaaaatcaaagttgaaagttaacttcaaacaa 16722308  T
Q  150 ttacttcatatacc 163  Q
    ||||||||||||||    
T  16722309 ttacttcatatacc 16722322  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 40545861 - 40545934
Alignment:
Q  90 aattgagattttactaattcaattttctcacaattaaagttgaaagttaactttaaacaattacttcatatacc 163  Q
    |||||||||| |  |||||||||| |||||||||  ||||||||||| | ||||||||||||  ||||||||||    
T  40545861 aattgagattcttttaattcaattatctcacaatcgaagttgaaagtaagctttaaacaattgattcatatacc 40545934  T

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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 21585610 - 21585499
Alignment:
Q  50 gtgagtttacaatttaccaaaatctaatctcaattttcttaattgagattttactaattcaattttctcacaattaaagttgaaagttaactttaaacaa 149  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||| ||    |||| |||||||||||||| |||||||||| ||||||| ||||||    
T  21585610 gtgagtttacaatttaccaaaacctaatctcaattttcttaat-gagacttcgtcaatttaattttctcacaatcaaagttgaaa-ttaacttcaaacaa 21585513  T
Q  150 ttacttcatatacc 163  Q
    |||||| |||||||    
T  21585512 ttacttgatatacc 21585499  T

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Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 23469779 - 23469879
Alignment:
Q  62 tttaccaaaatctaatctcaattttcttaattgagattttactaattcaattttctcacaattaaagttgaaagttaactttaaacaattacttcatata 161  Q
    |||||||||| ||||||||||| | |||||||||||||||||  ||| |||||||||||||| |||||||||| |||||||  |||||||||||||||||    
T  23469779 tttaccaaaa-ctaatctcaatatccttaattgagattttacagatttaattttctcacaatcaaagttgaaaattaacttcgaacaattacttcatata 23469877  T
Q  162 cc 163  Q
    ||    
T  23469878 cc 23469879  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 29799203 - 29799315
Alignment:
Q  51 tgagtttacaatttaccaaaatctaatctcaattttcttaattgagattttactaattcaattttctcacaattaaagttgaaagttaactttaaac-aa 149  Q
    ||||||||| ||||  ||||| ||||  |||||||  | ||||||||||||   ||||||||||| ||||||| |||||||||||| ||||| |||| ||    
T  29799203 tgagtttactattttacaaaacctaacatcaatttcatcaattgagattttctcaattcaattttatcacaatcaaagttgaaagtaaacttcaaacaaa 29799302  T
Q  150 ttacttcatatac 162  Q
    || ||||||||||    
T  29799303 ttgcttcatatac 29799315  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 22724833 - 22724943
Alignment:
Q  50 gtgagtttacaatttaccaaaatctaatctcaattttcttaattgagattttactaattcaattttctcacaattaaagttgaaagttaactttaaacaa 149  Q
    ||||||| || |||| |||||| |||||||||||||  | ||||||||| | |   |||||||||||||||||| |||||||||||||||||| ||||||    
T  22724833 gtgagttcactattttccaaaacctaatctcaatttcatcaattgagatatca---attcaattttctcacaatcaaagttgaaagttaacttcaaacaa 22724929  T
Q  150 ttacttcatatacc 163  Q
    || |||||||||||    
T  22724930 ttgcttcatatacc 22724943  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 5506114 - 5506019
Alignment:
Q  68 aaaatctaatctcaattttcttaattgagattttactaattcaattttctcacaattaaagttgaaagttaactttaaacaattacttcatatacc 163  Q
    |||| ||||||||||||| || |||||| |||||   ||||||||||  |||||||  ||||||||||| ||||| || |||||  ||||||||||    
T  5506114 aaaacctaatctcaatttcctcaattgatattttctcaattcaatttaatcacaatccaagttgaaagtgaacttcaagcaattgtttcatatacc 5506019  T

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