View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_39 (Length: 423)
Name: NF6876A_low_39
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_39 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 43041190 - 43040786
Alignment:
| Q |
19 |
catcaacgattacaaggaggatggtttcattgactgtggtcattctaatgaattatcaaacatgccgggagaaaaggagtttcaaaacaatcatggtaag |
118 |
Q |
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| T |
43041190 |
catcagcgattacaaggaggatggttttattgactgtggtcattctaatgaattatcaaatatgccgggagaaaaggagtttcaaaacaatcatggtaag |
43041091 |
T |
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| Q |
119 |
cgaaattagtgaactaaagttgtctctaattttttgttttctgaagcatgtatttttcacctcagactgctcagtggaggcacatattacagttcctcta |
218 |
Q |
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| T |
43041090 |
cgaaattagggaactaaagttgtctctaattttttgttttctgaagcatgtatttttcacctcagactgctcagtggaggcacatattacagctcttcta |
43040991 |
T |
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| Q |
219 |
gctagttctgtttctgagtctccaccatccagaagcagtgatgtaaaagagcaacaacaaggagaatgccagagttcagataaatgtaattctcctaacc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43040990 |
gctagttctgtttctgagtctccaccatccagaagcagtgatgtaaaagagcaacaacaaggagaatgccagagttcagataaatgtaattctcctaacc |
43040891 |
T |
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| Q |
319 |
atcgatgccccatttgtagacttcatatttagtaactgcatgctatttaagcaacatattgatgtttacttaaaagtaagttttaatttggtgactctac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43040890 |
atcgatgccccatttgtagacttcatatttagtaactgcatgctatttaagcaacatattgatgtttacttaaaagtaagttttaatttggtgactctac |
43040791 |
T |
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| Q |
419 |
aatag |
423 |
Q |
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| T |
43040790 |
aatag |
43040786 |
T |
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