View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_390 (Length: 226)
Name: NF6876A_low_390
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_390 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 36405982 - 36405757
Alignment:
| Q |
1 |
gacattcctacaataggataaagacaaattatttacattccctagaccaattttttcgccaataaccagatcttcccatggaatctcacattcaccaaca |
100 |
Q |
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| T |
36405982 |
gacattcctacaataggataaagacaaattatttacattacctagaccaattctttcaccaataaccagatcttcccatggaatctcacattcaccaaca |
36405883 |
T |
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| Q |
101 |
tctgcatcgtccaatatttgatcggccctatttgtaatggaatcgattgaagaggtaggtctatctgaatcttttaattggaaattgcttcccatgaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36405882 |
tctgcatcgtccaatatttgatcggccctatttgtaatggaatcgattgaagagataggtctatctgaatcttttaattggaaattgcttcccatgaatc |
36405783 |
T |
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| Q |
201 |
tgtcatgtgtgcacttcctcctgtca |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
36405782 |
tgtcatgtgtgcacttcctcctgtca |
36405757 |
T |
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