View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_393 (Length: 225)

Name: NF6876A_low_393
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_393
NF6876A_low_393
[»] chr2 (5 HSPs)
chr2 (6-205)||(2803204-2803404)
chr2 (16-89)||(33561499-33561573)
chr2 (18-59)||(36005930-36005971)
chr2 (18-89)||(30312825-30312897)
chr2 (15-59)||(31468797-31468841)
[»] chr6 (1 HSPs)
chr6 (13-89)||(8481962-8482039)
[»] chr5 (1 HSPs)
chr5 (6-119)||(10351209-10351325)
[»] chr4 (3 HSPs)
chr4 (13-59)||(22028412-22028458)
chr4 (37-114)||(42480533-42480611)
chr4 (30-114)||(7147702-7147786)
[»] chr1 (1 HSPs)
chr1 (13-59)||(32594761-32594807)
[»] chr7 (2 HSPs)
chr7 (6-55)||(7192786-7192835)
chr7 (18-59)||(21619095-21619136)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 205
Target Start/End: Original strand, 2803204 - 2803404
Alignment:
Q  6 tgagatggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttataga-tgttcaacctccacttctttaaataatgtga 104  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  2803204 tgagttggacatcacacttttacccaaaacgttaagacattaagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaacaatgtga 2803303  T
Q  105 gacttttaacctacaattgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803304 gacttttaacctacaattgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaa 2803403  T
Q  205 a 205  Q
    |    
T  2803404 a 2803404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 33561499 - 33561573
Alignment:
Q  16 atcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttataga-tgttcaacctccactt 89  Q
    |||||||| ||||||||||| |||||||| |||||||||||||| ||||  ||||| | |||| |||||||||||    
T  33561499 atcacactcttacccaaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccactt 33561573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 36005930 - 36005971
Alignment:
Q  18 cacacttttacccaaaacgttaagacattgagtttatgggtc 59  Q
    |||||||||||||||||| ||||| || ||||||||||||||    
T  36005930 cacacttttacccaaaaccttaaggcaatgagtttatgggtc 36005971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 30312897 - 30312825
Alignment:
Q  18 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttataga-tgttcaacctccactt 89  Q
    |||||||||||||||||| |||||  | | ||||||||||||||||   ||||| | ||||||||||||||||    
T  30312897 cacacttttacccaaaaccttaaggaaataagtttatgggtcatctaagttataaagtgttcaacctccactt 30312825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 31468797 - 31468841
Alignment:
Q  15 catcacacttttacccaaaacgttaagacattgagtttatgggtc 59  Q
    ||||||||| ||||||||||| ||||| || ||||||||||||||    
T  31468797 catcacactcttacccaaaaccttaaggcaatgagtttatgggtc 31468841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 8482039 - 8481962
Alignment:
Q  13 gacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttataga-tgttcaacctccactt 89  Q
    |||| |||||| ||||||||||  ||||| || |||||||||| |||||||| |||||| | ||||||||||||||||    
T  8482039 gacaccacactcttacccaaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccactt 8481962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 10351209 - 10351325
Alignment:
Q  6 tgagatggacatcacacttttacccaaaa--cgttaagacattgagtttatgggtcatctcttttat-agatgttcaacctccacttctttaaataatgt 102  Q
    |||||| ||||||||||||||||||||||    |||||||| |||||||||||||||| ||   ||| | ||||||||||||| ||| ||||   |||||    
T  10351209 tgagatagacatcacacttttacccaaaaatatttaagacaatgagtttatgggtcatttcacgtataaaatgttcaacctccgcttttttagccaatgt 10351308  T
Q  103 gagacttttaacctaca 119  Q
    ||||||| |||| ||||    
T  10351309 gagacttctaacttaca 10351325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 22028412 - 22028458
Alignment:
Q  13 gacatcacacttttacccaaaacgttaagacattgagtttatgggtc 59  Q
    |||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  22028412 gacaccacactcttacccaaaacattaagacaatgagtttatgggtc 22028458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 42480611 - 42480533
Alignment:
Q  37 ttaagacattgagtttatgggtcatctcttttatagat-gttcaacctccacttctttaaataatgtgagacttttaac 114  Q
    ||||||||| |||||||||| |||||||  ||| | || ||||||||||||||| || ||||| | |||||||||||||    
T  42480611 ttaagacatcgagtttatggatcatctcacttacatattgttcaacctccactttttcaaatagtatgagacttttaac 42480533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 7147702 - 7147786
Alignment:
Q  30 caaaacgttaagacattgagtttatgggtcatctcttttatagatgttcaacctccacttctttaaataatgtgagacttttaac 114  Q
    |||||| ||||||||||| ||||| ||||| ||||  ||| |  |||||||||||||||| | |||  |||||||||||| ||||    
T  7147702 caaaaccttaagacattgggtttacgggtcctctcacttaaaagtgttcaacctccacttttctaagcaatgtgagacttctaac 7147786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 32594761 - 32594807
Alignment:
Q  13 gacatcacacttttacccaaaacgttaagacattgagtttatgggtc 59  Q
    |||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  32594761 gacaccacactcttacccaaaaccttaagacaatgagtttatgggtc 32594807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 7192835 - 7192786
Alignment:
Q  6 tgagatggacatcacacttttacccaaaacgttaagacattgagtttatg 55  Q
    |||| |||||||||||  ||||| |||||| |||||||||||||||||||    
T  7192835 tgagttggacatcacatctttactcaaaaccttaagacattgagtttatg 7192786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 21619095 - 21619136
Alignment:
Q  18 cacacttttacccaaaacgttaagacattgagtttatgggtc 59  Q
    |||||||||||||||||| |||||||| || |||||||||||    
T  21619095 cacacttttacccaaaaccttaagacaatgggtttatgggtc 21619136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University