View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_398 (Length: 224)
Name: NF6876A_low_398
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_398 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 19190317 - 19190113
Alignment:
| Q |
20 |
caccaccagtagctccaccagaacgtccacctccataaccactgttagatcggttatcaagaccgtaaccaccacctgtagtaccaccaccataacgtcc |
119 |
Q |
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| T |
19190317 |
caccaccagtagctccaccagaacgtccacctccataaccactgttagatcggttatcaagaccgtaaccaccacctgtagtaccaccaccataacgtcc |
19190218 |
T |
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| Q |
120 |
ataaccactctcatgatacttattatccttatttccataataaccaccatttccaccaaacccaccaccagaataaccattttttcgtccggtaggaaca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19190217 |
ataaccactctcatgatacttattatccttatttccataataaccaccatttccaccaaacccaccaccagaataacccttttttcgtccggtaggaaca |
19190118 |
T |
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| Q |
220 |
ccgga |
224 |
Q |
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||||| |
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| T |
19190117 |
ccgga |
19190113 |
T |
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