View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_399 (Length: 224)
Name: NF6876A_low_399
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_399 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold1075 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 17006036 - 17006250
Alignment:
| Q |
1 |
aggttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacccacacaaggtgaccctccaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17006036 |
aggttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaa |
17006135 |
T |
|
| Q |
101 |
ctagnnnnnnnnnnnnnnnnggacagacaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcaaattctttgaacttccatattgg |
200 |
Q |
| |
|
| || |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17006136 |
ccag---------aaaaaaaggacaggcaagaggcaatctacaaaagatgaccctccaatctagaagaagaaaagcatattctttgaacttccatattgg |
17006226 |
T |
|
| Q |
201 |
aaggacaatcttctgcgtcataat |
224 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
17006227 |
aaggacaatcttttgcgtcataat |
17006250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1075 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 3050 - 2847
Alignment:
| Q |
12 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacccacacaaggtgaccctccaaactagnnnnnnn |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
3050 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccagaaaaaaa |
2951 |
T |
|
| Q |
112 |
nnnnnnnnnggacagacaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcaaattctttgaacttccatattggaaggacaatct |
211 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2950 |
---------ggacaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatct |
2860 |
T |
|
| Q |
212 |
tctgcgtcataat |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2859 |
tctgcgtcataat |
2847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University