View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_4 (Length: 601)
Name: NF6876A_low_4
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Complemental strand, 37821844 - 37821240
Alignment:
| Q |
1 |
gaatattgaagttatgtaaagattccaggacttaacaagattctatacccaaccttgtattaagattttctatatctgtagctttaattttgcaggcaag |
100 |
Q |
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| T |
37821844 |
gaatatggaagttatgtaaagattccaggacttaacaagattctatacccaaccttgtattaagattttctatatctgtagctttaattttgcaggcaag |
37821745 |
T |
|
| Q |
101 |
tttaaattatttgatctggagctgcattataaaatgtgcatttgattgtgtgaagatgtcgttgaattggtgttgcatcttaacttctgtgcacttgaga |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821744 |
tttaaattatttgatctggggctgcattataaaatgtgcaattgattgtgtgaagatgtcgttgaattggtgttgcatcttaacttctgtgcacttgaga |
37821645 |
T |
|
| Q |
201 |
ctgacattatgcatgttatacaacaactatctgtctgtacctagttactgcgtgtcaatttagttcagttggtgatttagcatgtgctataatactggcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821644 |
ctgacattatgcatgttatacaacaactatctgtctgtacctagttactgcgtgtcaatttagttcagttggtgatttagcatgtgctataatactggcc |
37821545 |
T |
|
| Q |
301 |
aaaactggccatagtactgttctttatttgattattattttgataatgtaatgttttttaacggttgatactgtaatactattcatctcttacatatata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821544 |
aaaactggccatagtactgttctttatttgattattattttgataatgtaatgttttttaacggttgatactgtaatactattcatctcttacatatata |
37821445 |
T |
|
| Q |
401 |
att------------atcatacataactatagcattttattaatgatatatgttaagagcaattccaaaactcatggtaatgtgatgtgactgctggcct |
488 |
Q |
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||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821444 |
attatcacaccctttatcatacataactatagcattttaataatg--atatgttaagagcaattccaaaactcatggtaatgtgatgtgactgctggcct |
37821347 |
T |
|
| Q |
489 |
cacaatttcttccgtagtactcgtatataaaagtccacttagtgggcattccactaaccactctacaaagttttaaatttttggtgtcattggtctccta |
588 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821346 |
cacaatttcttccgtagtactcgtatataaaagtccacttagtggccattccactaaccactctacaaagttttaaatttttggtgtcattggtctccta |
37821247 |
T |
|
| Q |
589 |
tcatttc |
595 |
Q |
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| T |
37821246 |
tcatttc |
37821240 |
T |
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