View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_401 (Length: 224)

Name: NF6876A_low_401
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_401
NF6876A_low_401
[»] chr8 (3 HSPs)
chr8 (6-224)||(4146155-4146373)
chr8 (6-60)||(8018266-8018320)
chr8 (6-93)||(17654700-17654787)
[»] chr3 (1 HSPs)
chr3 (6-98)||(41430382-41430474)
[»] chr6 (1 HSPs)
chr6 (6-93)||(12734679-12734766)
[»] chr7 (1 HSPs)
chr7 (6-83)||(30269629-30269706)
[»] chr1 (2 HSPs)
chr1 (6-81)||(31525096-31525171)
chr1 (6-83)||(44269660-44269737)
[»] chr5 (2 HSPs)
chr5 (6-93)||(11106952-11107039)
chr5 (18-97)||(42367588-42367667)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 4146373 - 4146155
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaaggagacacgtgacaaagaaactcaaagttcgacgaggcatcaaacttaacn 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  4146373 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggcatcaaacttaaca 4146274  T
Q  106 nnnnnntctatacatcgattcacttctcggaaagggggatatatcgtaacatttcctttgctccaacaactatttatatatacacataaagagactaaag 205  Q
          |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146273 aaaaaatctatacatcgattcacttctcggaaagtgtgatatatcgtaacatttcctttgctccaacaactatttatatatacacataaagagactaaag 4146174  T
Q  206 ggcttaaggattgaaaatg 224  Q
    |||||||||||||||||||    
T  4146173 ggcttaaggattgaaaatg 4146155  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 8018266 - 8018320
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaaggagac 60  Q
    ||||||| ||||||||| |||||||||||||||||||||||  |||| |||||||    
T  8018266 aaaagtttcagctgcatcactccgaagaaaattcaaaagatctgtcggaggagac 8018320  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 17654700 - 17654787
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaaggagacacgtgacaaagaaactcaaagttcgacgaggca 93  Q
    ||||||| ||| ||||| ||||| ||||||||||||| ||| ||  | || |||| | |||||||||||||||||||| || ||||||    
T  17654700 aaaagtttcagatgcatcactccaaagaaaattcaaacgatccgatggagaagactcatgacaaagaaactcaaagtttgatgaggca 17654787  T

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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 41430382 - 41430474
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaaggagacacgtgacaaagaaactcaaagttcgacgaggcatcaaa 98  Q
    ||||||||||||||||| ||||||||||||||||||||||| || | |||||||| |||||||||||||||||||||| || |||||| ||||    
T  41430382 aaaagttccagctgcatcactccgaagaaaattcaaaagatccgccaaaggagactcgtgacaaagaaactcaaagtttgatgaggcagcaaa 41430474  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 12734766 - 12734679
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaaggagacacgtgacaaagaaactcaaagttcgacgaggca 93  Q
    ||||||||||||||||| ||||||||||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || ||||||    
T  12734766 aaaagttccagctgcatcactccgaagaagattcaaaagatccgttggaggagactcgtgataaagaaactcaaagtttgatgaggca 12734679  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 30269629 - 30269706
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaaggagacacgtgacaaagaaactcaaagtt 83  Q
    ||||||||||||||||| |||||||||||| || |||||||| || | ||||||| ||||||||||||||||||||||    
T  30269629 aaaagttccagctgcatcactccgaagaaagttgaaaagatttgttggaggagactcgtgacaaagaaactcaaagtt 30269706  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 31525171 - 31525096
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaaggagacacgtgacaaagaaactcaaag 81  Q
    ||||| ||||||||||| ||| ||||||| ||||||||||| ||| | ||||||| ||||||||||||||||||||    
T  31525171 aaaagctccagctgcatcactgcgaagaagattcaaaagatccgttggaggagactcgtgacaaagaaactcaaag 31525096  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 44269660 - 44269737
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaaggagacacgtgacaaagaaactcaaagtt 83  Q
    ||||||||||||||||| ||| ||||||| ||||||||||| |   | ||||||| ||||||||||||||||||||||    
T  44269660 aaaagttccagctgcatcacttcgaagaagattcaaaagatccactggaggagactcgtgacaaagaaactcaaagtt 44269737  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 11107039 - 11106952
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaaggagacacgtgacaaagaaactcaaagttcgacgaggca 93  Q
    |||||||||| || ||| ||||||||||| ||||||||||| ||| | ||||||| ||| ||||||||||||| |||| || ||||||    
T  11107039 aaaagttccaactacatcactccgaagaagattcaaaagatccgttggaggagactcgtaacaaagaaactcagagtttgatgaggca 11106952  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 42367588 - 42367667
Alignment:
Q  18 tgcatgactccgaagaaaattcaaaagattcgtcgaaggagacacgtgacaaagaaactcaaagttcgacgaggcatcaa 97  Q
    ||||| ||||| ||||||| | ||||||| |||||||| |||| | ||||||||||||| |||||| || ||| ||||||    
T  42367588 tgcatcactccaaagaaaacttaaaagatccgtcgaagaagactcttgacaaagaaacttaaagtttgatgagtcatcaa 42367667  T

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