View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_404 (Length: 224)
Name: NF6876A_low_404
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_404 |
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| [»] scaffold1425 (1 HSPs) |
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Alignment Details
Target: scaffold1425 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold1425
Description:
Target: scaffold1425; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 39 - 195
Target Start/End: Original strand, 980 - 1136
Alignment:
| Q |
39 |
agacgaagaagcagcgattacggaagagaaggagtgaagcaagcatgatagaaggctgaaggagaggggaatgactggggagtctgcaacggtggagaag |
138 |
Q |
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| T |
980 |
agacgaagaagcagcgattacggaagagaaggagtgaagcaagcatgatagaaggctgaaggagaggggaatgactggggagtctgcaacggtggagaag |
1079 |
T |
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| Q |
139 |
atgaaaggtgctgcatcaacaacacaacgggcaagtccatttttcatcttctcttga |
195 |
Q |
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| T |
1080 |
atgaaaggtgctgcatcaacaacaaaaagggcaaatccatttttcatcttctcttga |
1136 |
T |
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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 193
Target Start/End: Complemental strand, 5061217 - 5061089
Alignment:
| Q |
60 |
ggaagagaaggagtgaagcaagcatgatagaaggctgaaggagaggggaatgactgggg--agtctgcaacggtggagaagatgaaaggtgctgcatcaa |
157 |
Q |
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| T |
5061217 |
ggaagagaaagagtgaagcaagcatgatagaagg-------agaggggaatgactggggggagtctataacggtggagaagatgaaaggtgttgtatcaa |
5061125 |
T |
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| Q |
158 |
caacacaacgggcaagtccatttttcatcttctctt |
193 |
Q |
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| T |
5061124 |
caacaaaaagggtaaatccatttttcatcttctctt |
5061089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 42816453 - 42816413
Alignment:
| Q |
153 |
atcaacaacacaacgggcaagtccatttttcatcttctctt |
193 |
Q |
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| T |
42816453 |
atcaacaacaaaatgggcaaatccatttttcatcttctctt |
42816413 |
T |
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