View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_410 (Length: 222)
Name: NF6876A_low_410
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_410 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17701144 - 17700926
Alignment:
| Q |
1 |
gtgaataatggcggcaccttgaagaagactacaaaaattagttgtgttttttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaaga |
100 |
Q |
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| T |
17701144 |
gtgaataacggcggcaccttgaagaagactataaaaattacttgtgttttttcttcttctcttcacaaccatgatcatgatgatg---ggaaaccgaaga |
17701048 |
T |
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| Q |
101 |
accatacatgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactat |
200 |
Q |
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| T |
17701047 |
accatacatgtgatgtttgtaacaaggtatttttatccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactat |
17700948 |
T |
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| Q |
201 |
tattcactcaccgactgcccaa |
222 |
Q |
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| T |
17700947 |
tattcactcaccgactgcccaa |
17700926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 17662935 - 17663151
Alignment:
| Q |
1 |
gtgaataatggcggcaccttgaagaagactacaaaaattagttgtgttttttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaaga |
100 |
Q |
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| T |
17662935 |
gtgaataacggcggcaccttgaagaagactacaaaaattacttgtgttttttcttcttctcttcacaaccatgatcatgatgatt---ggaaaccgaaga |
17663031 |
T |
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| Q |
101 |
accatacatgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactat |
200 |
Q |
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| T |
17663032 |
accatacaagtgatgtttgtcacaaggtattttcatccaacactgctttgaagggacatatgagatggcatactccaaagggtttgaagaaggatactat |
17663131 |
T |
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| Q |
201 |
tattcactcaccgactgccc |
220 |
Q |
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| T |
17663132 |
tattccctcactgactgccc |
17663151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 21900125 - 21899954
Alignment:
| Q |
46 |
gttttttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaagaaccatacatgtgatgtttgtaacaaggtattttcatccaacaatg |
145 |
Q |
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| T |
21900125 |
gttttttcttcttctcttcacaatcataatcatgatgatt---ggaaactgaagaaccatacatgtgatgtttgtaacaaggttttttcgtccaacaatg |
21900029 |
T |
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| Q |
146 |
ctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactattattcactcaccgactgccc |
220 |
Q |
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| T |
21900028 |
ctttgaacgggcatatgagatggcatactcaaaagggttcgaagaatggtgttattaaccacccaccgactgccc |
21899954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 38227637 - 38227577
Alignment:
| Q |
107 |
catgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatg |
167 |
Q |
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| T |
38227637 |
catgtgatgtttgcaacaaggtttttacttctaacaaagcattgaatggacatatgagatg |
38227577 |
T |
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