View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_411 (Length: 222)
Name: NF6876A_low_411
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_411 |
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| [»] scaffold1051 (1 HSPs) |
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Alignment Details
Target: scaffold1051 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: scaffold1051
Description:
Target: scaffold1051; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 2696 - 2490
Alignment:
| Q |
12 |
gacatcatattatgagagttctctttgatattcctatagataattaatgagagtttagaagtatgaagatgtcatgagtgagtaaaatggagttagtgtt |
111 |
Q |
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| T |
2696 |
gacaccatattatgagagttttctttgatattcctatagataat----gagagtttagaagtatgaagatgtcatgagtgagtaaaatggagttagtgtt |
2601 |
T |
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| Q |
112 |
aaattttgtacttaaacaaaaaggggaaaaggaaacaagaaattgaaggttagtttgaggcccaatcattgtttgattctggttgtgctattcttgtttt |
211 |
Q |
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| T |
2600 |
aaattttgtacttaaacaaaaaggggaaaaggaaacaagaaattgaaggttagtttgtggcccaatcattgtttgattctggttgtgctattcttgtttt |
2501 |
T |
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| Q |
212 |
atgcaattctt |
222 |
Q |
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||||||||||| |
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| T |
2500 |
atgcaattctt |
2490 |
T |
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