View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_413 (Length: 222)
Name: NF6876A_low_413
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_413 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 222
Target Start/End: Original strand, 40115299 - 40115499
Alignment:
| Q |
22 |
atgatgccaaggtggattagtggcgagtgaagttatgaagctnnnnnnnnnnnnctttggaatgtggtggagaccatccttatgcaatccttttagaaga |
121 |
Q |
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| T |
40115299 |
atgatgccaaggtggagtagtggcgagtgaagttatgaagctggtggtgggtggctttggaatgtggtagagaccatccttatgcaatccttttagaaga |
40115398 |
T |
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| Q |
122 |
ggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttttgcataaatgtgagacagacaataacttgc |
221 |
Q |
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| T |
40115399 |
ggctcccttgtcttcaaatccttcaccaaaaaataatcagaaaaaaattcaatggatatagggttagttttgcataaatgtgagacagacaataacttgc |
40115498 |
T |
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| Q |
222 |
a |
222 |
Q |
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| T |
40115499 |
a |
40115499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 9007211 - 9007300
Alignment:
| Q |
102 |
tatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttt |
191 |
Q |
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| T |
9007211 |
tatgcagtcctttgaggagaggctcctttgtcttcaaatccttcaccaaaaaacaatcagaaaaaaattcaatggaaatagggttagttt |
9007300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 42360937 - 42361002
Alignment:
| Q |
95 |
ccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatca |
160 |
Q |
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| T |
42360937 |
ccatccttatgcattccttttataagaggagcccttgtcttcaagtcctttaccaagtaataatca |
42361002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 3017263 - 3017198
Alignment:
| Q |
95 |
ccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatca |
160 |
Q |
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| T |
3017263 |
ccatccttatgcaatccttttagaagaggagcccttgtcttcaagtcctttaccaagtaataatca |
3017198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 161
Target Start/End: Original strand, 9038424 - 9038459
Alignment:
| Q |
126 |
cccttgtcttcaaatccttcaccaaaaaataatcag |
161 |
Q |
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| T |
9038424 |
cccttgtcttcaaatccttcaccaaaaaaaaatcag |
9038459 |
T |
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