View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_417 (Length: 221)
Name: NF6876A_low_417
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_417 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 21317021 - 21317246
Alignment:
| Q |
1 |
tgttcctataggaaaaatgaactgtacctcttgagcaacaaggtgttgctccttcacctgtgaattgaattacaataactagtcatatgctccttctgaa |
100 |
Q |
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|||||||||| |||||||||||||||||||||||| || | |||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
21317021 |
tgttcctatacgaaaaatgaactgtacctcttgagaaaga-ggtgttcctccttcacctgtgagttgaattacgataactagtcatatgctccttctgaa |
21317119 |
T |
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| Q |
101 |
agagagggggtgtattttcaaaagacactccaacacccaaataagaatggatgctagaaggtatcaaaagtggtaagtcattaaagtga------ttgta |
194 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
21317120 |
agagagggggtgtattttcaaaagacactccaacacttaaataagaatgggtgctagaaggtatcaaaagtggtaagtcattaaagtgatcgtactcgta |
21317219 |
T |
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| Q |
195 |
catgtgtgatgaggcccctatttatag |
221 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
21317220 |
catgtgtggtgaggcccctatttatag |
21317246 |
T |
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