View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_418 (Length: 220)
Name: NF6876A_low_418
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_418 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 1580634 - 1580844
Alignment:
| Q |
10 |
ttcgccaagaaacaaaattgcctcttaatattccacaaagcacaatgaaaggagaagtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag |
109 |
Q |
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| T |
1580634 |
ttcgccaagaaacaaaattgcctcttaatattccacaaagcacaatgaaaggagaagcagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag |
1580733 |
T |
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| Q |
110 |
catggctgataaggcgaaaagaagagtgaaaccaaagagaacgaagaagatggtaccnnnnnnncaagataaggaaaaattgtcatcacctccgccaata |
209 |
Q |
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| T |
1580734 |
catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccaaaaaaacaagataaggaaaaattgtcatcacctccgccaata |
1580833 |
T |
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| Q |
210 |
ttgcctattga |
220 |
Q |
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| T |
1580834 |
ttgcctattga |
1580844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 1604181 - 1603971
Alignment:
| Q |
10 |
ttcgccaagaaacaaaattgcctcttaatattccacaaagcacaatgaaaggagaagtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag |
109 |
Q |
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| T |
1604181 |
ttcgccaagaaacaaaattgcctcttaatattccacaaagcacaatgaaaggagaagcagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag |
1604082 |
T |
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| Q |
110 |
catggctgataaggcgaaaagaagagtgaaaccaaagagaacgaagaagatggtaccnnnnnnncaagataaggaaaaattgtcatcacctccgccaata |
209 |
Q |
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| T |
1604081 |
catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccaaaaaaacaagataaggaaaaattgtcatcacctccgccaata |
1603982 |
T |
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| Q |
210 |
ttgcctattga |
220 |
Q |
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| T |
1603981 |
ttgcctattga |
1603971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 1591048 - 1590881
Alignment:
| Q |
51 |
acaatgaaaggagaagtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtagcatggctg-ataaggcgaaaagaagagtgaaaccaaagaga |
149 |
Q |
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| T |
1591048 |
acaatggaaggagatgtcgtgaataaaaagaaaaggtgtcgctcaagtgatgaaggtagca-gcatgttttatgcggaaagaagtgttaaaccaaagacc |
1590950 |
T |
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| Q |
150 |
acgaagaagatggtaccnnnnnnncaagataaggaaaaattgtcatcacctccgccaatattgcctatt |
218 |
Q |
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| T |
1590949 |
acgaagaagatcaaaccaaaaaaacatgataaggaaaatttgtcatcacctccaccaatattgcctatt |
1590881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 1587191 - 1587342
Alignment:
| Q |
67 |
tagtgaataagaagaaaaggtgtcgctcaagtgatgaaggt---agcatggctgataaggcgaaaagaagagtgaaaccaaagagaacgaagaagatggt |
163 |
Q |
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| T |
1587191 |
tagtgaataaaaagaaaaggtgtcgctcaagtgatgaaggtagcagcatgtcttat---gtggaaagaagagttaaaccaaagaccacgaagaagatcaa |
1587287 |
T |
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| Q |
164 |
accnnnnnnncaagataaggaaaaattgtcatcacctccgccaatattgcctatt |
218 |
Q |
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| T |
1587288 |
accaaaaaaacatgataaggaaaatttgtcatcacctccaccaatattgcctatt |
1587342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 19270616 - 19270464
Alignment:
| Q |
66 |
gtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggt---agcatggctgataaggcgaaaagaagagtgaaaccaaagagaacgaagaagatgg |
162 |
Q |
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| T |
19270616 |
gtagtgaataaaaagaaaaggtgttgctcaagtgatgaaggtagaagcatgtc---tcacgcagaaagaagagtgaaaccaaagagcacgaagaagatga |
19270520 |
T |
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| Q |
163 |
taccnnnnnnncaagataaggaaaaattgtcatcacctccgccaatattgcctatt |
218 |
Q |
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| T |
19270519 |
aaccaaaaaaacaagataaggaaaatttgtcatctcctccaccaatattgcctatt |
19270464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 39616349 - 39616233
Alignment:
| Q |
39 |
attccacaaagcacaatgaaaggagaagtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtagcatggctgataaggcgaaaagaagagtga |
138 |
Q |
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| T |
39616349 |
attccacaaaacacagtggaaggagaagtagcgaataccaagaaaaggtgtcgcccatgtgatgaagttagcatgtcttat---gcggaaagaagaacga |
39616253 |
T |
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| Q |
139 |
aaccaaagagaacgaagaag |
158 |
Q |
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| T |
39616252 |
aaccaaagaccacgaagaag |
39616233 |
T |
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