View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_421 (Length: 219)
Name: NF6876A_low_421
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_421 |
 | |
|
| [»] chr4 (10 HSPs) |
| |
|
| [»] scaffold0009 (2 HSPs) |
| | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 22990542 - 22990367
Alignment:
| Q |
44 |
agtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtacttcat |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990542 |
agtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttactggtacttcataagagtacttcat |
22990443 |
T |
|
| Q |
144 |
agttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990442 |
agttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcc |
22990367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 22714683 - 22714858
Alignment:
| Q |
44 |
agtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtacttcat |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22714683 |
agtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttactggtacttcataagagtacttcat |
22714782 |
T |
|
| Q |
144 |
agttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcc |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22714783 |
agttactagcactttttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcc |
22714858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 39 - 219
Target Start/End: Original strand, 28948935 - 28949115
Alignment:
| Q |
39 |
acatcagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtac |
138 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
28948935 |
acataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttatttgtacttcataagagtac |
28949034 |
T |
|
| Q |
139 |
ttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcc |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28949035 |
ttcatagttactagcactttttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcc |
28949115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 39 - 219
Target Start/End: Complemental strand, 22697170 - 22696990
Alignment:
| Q |
39 |
acatcagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtac |
138 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22697170 |
acataagtgaaccataaatacgagcataattatcacacaacataagtcttcattaagggatagaaacattacataagttactagtacttcataagagtac |
22697071 |
T |
|
| Q |
139 |
ttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcc |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
22697070 |
ttcatagttactaccacttcttagattacttcctaattgaaaggaaaaacataacagtacttcaaagttaccggtacttcc |
22696990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 39 - 219
Target Start/End: Complemental strand, 46956857 - 46956677
Alignment:
| Q |
39 |
acatcagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtac |
138 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
46956857 |
acataagtgaacaaaaaatacaagcataattatcacacaacataagccttcattaaggtatagaaacattacataagttactagtacttcataatagtac |
46956758 |
T |
|
| Q |
139 |
ttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
46956757 |
ttcatagttactagcacttcttagattacttcctaattaaaaggcaaaacataacagtacttgatagttactagtacttcc |
46956677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 22696930 - 22696888
Alignment:
| Q |
134 |
agtacttcatagttactagcacttcttagattacttcctaatt |
176 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
22696930 |
agtacttcatagttactagtacttcgtagattacttcttaatt |
22696888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 46956708 - 46956655
Alignment:
| Q |
128 |
cataagagtacttcatagttactagcacttcttagattacttcctaattgaaag |
181 |
Q |
| |
|
||||| ||||||| ||||||||||| ||||| ||||||||||| ||||| |||| |
|
|
| T |
46956708 |
cataacagtacttgatagttactagtacttcctagattacttcttaatttaaag |
46956655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 22714912 - 22714960
Alignment:
| Q |
128 |
cataagagtacttcatagttactagcacttcttagattacttcctaatt |
176 |
Q |
| |
|
||||| |||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
22714912 |
cataacagtacttcatagttactaatacttcctagattacttcttaatt |
22714960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 22990313 - 22990265
Alignment:
| Q |
128 |
cataagagtacttcatagttactagcacttcttagattacttcctaatt |
176 |
Q |
| |
|
||||| |||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
22990313 |
cataacagtacttcatagttactaatacttcctagattacttcttaatt |
22990265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 28949169 - 28949217
Alignment:
| Q |
128 |
cataagagtacttcatagttactagcacttcttagattacttcctaatt |
176 |
Q |
| |
|
||||| |||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
28949169 |
cataacagtacttcatagttactattacttcctagattacttcttaatt |
28949217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 200556 - 200718
Alignment:
| Q |
44 |
agtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtacttcat |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
200556 |
agtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttactggtacttcataagagtacttcat |
200655 |
T |
|
| Q |
144 |
agttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagt |
206 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
200656 |
agttactagcacttcttagattaattcctaattgaaaggaaaaacataacagtacttcatagt |
200718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 200795 - 200843
Alignment:
| Q |
128 |
cataagagtacttcatagttactagcacttcttagattacttcctaatt |
176 |
Q |
| |
|
||||| |||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
200795 |
cataacagtacttcatagttactattacttcctagattacttcttaatt |
200843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 39 - 219
Target Start/End: Complemental strand, 19646604 - 19646424
Alignment:
| Q |
39 |
acatcagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtac |
138 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19646604 |
acataagtgaaccaaaaatacaagcataattatcacacaacataagtcttcattaagggatagaaatattacataagttactggtacttcataagagtac |
19646505 |
T |
|
| Q |
139 |
ttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcc |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
19646504 |
ttcatagttactaccacttcttagattacttcctaattgaaaggaaaaacataacaatacttcaaagttaccggtacttcc |
19646424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 19646370 - 19646322
Alignment:
| Q |
128 |
cataagagtacttcatagttactagcacttcttagattacttcctaatt |
176 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
19646370 |
cataagagtacttcatagttactagtacttcgtagattacttcttaatt |
19646322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 39 - 209
Target Start/End: Complemental strand, 20087906 - 20087736
Alignment:
| Q |
39 |
acatcagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtac |
138 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
20087906 |
acataagtgaaccaaaaatacaagcataattatcacacaacataagtcttcattaagggatagaaacattacataagttactagtacttcataatagtac |
20087807 |
T |
|
| Q |
139 |
ttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttac |
209 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20087806 |
ttcatagttactagtacttcttagattacttcctaattaaaaggcaaaacataacagtacttcatagttac |
20087736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 20087671 - 20087624
Alignment:
| Q |
129 |
ataagagtacttcatagttactagcacttcttagattacttcctaatt |
176 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
20087671 |
ataacagtacttcatagttactagtacttcctagattacttcttaatt |
20087624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 20087757 - 20087704
Alignment:
| Q |
128 |
cataagagtacttcatagttactagcacttcttagattacttcctaattgaaag |
181 |
Q |
| |
|
||||| ||||||||||||||||||| |||| ||||||||||| ||||| |||| |
|
|
| T |
20087757 |
cataacagtacttcatagttactagtactttctagattacttcttaatttaaag |
20087704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 39 - 219
Target Start/End: Complemental strand, 4344516 - 4344336
Alignment:
| Q |
39 |
acatcagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtac |
138 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4344516 |
acataagtgaacaaaaaatacaagcataattatcacacaacataagtcttcattaagggatagaaacattacataagttactagtacttcataagagtac |
4344417 |
T |
|
| Q |
139 |
ttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcc |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
4344416 |
ttcatagttactaccacttcttagattacttcctaattgaaaggaaaaacataacaatacttcaaagttactggtacttcc |
4344336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 4344283 - 4344235
Alignment:
| Q |
128 |
cataagagtacttcatagttactagcacttcttagattacttcctaatt |
176 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
4344283 |
cataacagtacttcatagttactagtacttcgtagattacttcttaatt |
4344235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 39 - 219
Target Start/End: Complemental strand, 22808390 - 22808210
Alignment:
| Q |
39 |
acatcagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtac |
138 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
22808390 |
acataagtgaaccaaaaatacgagcataattatcacacaacataagtcttcattaagggataaaaaaattacataagttactagtacttcataagagtac |
22808291 |
T |
|
| Q |
139 |
ttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcc |
219 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||| | |||| |||| |||||||||||||||| |||||||| |
|
|
| T |
22808290 |
ttcatggttactaccacttcttagattacttcctaattgaaaagaaaaatataatagtacttcatagttactagtacttcc |
22808210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 22808240 - 22808188
Alignment:
| Q |
129 |
ataagagtacttcatagttactagcacttcttagattacttcctaattgaaag |
181 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||||||||||| ||||| |||| |
|
|
| T |
22808240 |
ataatagtacttcatagttactagtacttcctagattacttcttaatttaaag |
22808188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 22808148 - 22808108
Alignment:
| Q |
136 |
tacttcatagttactagcacttcttagattacttcctaatt |
176 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
22808148 |
tacttcatagttactagtacttcatagattacttcttaatt |
22808108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 39 - 208
Target Start/End: Original strand, 23362371 - 23362527
Alignment:
| Q |
39 |
acatcagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtac |
138 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
23362371 |
acataagtgaaccaaaaatacgagcataattatcacacaacataagtcttcattaagggataaaaacattacataagttact-------------agtac |
23362457 |
T |
|
| Q |
139 |
ttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagtta |
208 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23362458 |
ttcatggttactaccacttcttagattacttcctaattgaaaggaaaaacataacagtacttcatagtta |
23362527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 23362507 - 23362560
Alignment:
| Q |
128 |
cataagagtacttcatagttactagcacttcttagattacttcctaattgaaag |
181 |
Q |
| |
|
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| T |
23362507 |
cataacagtacttcatagttattagtacttcctagattacttcttaatttaaag |
23362560 |
T |
|
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