View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_422 (Length: 219)
Name: NF6876A_low_422
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_422 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] chr4 (8 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 200862 - 200717
Alignment:
| Q |
76 |
taagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtc |
173 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | || | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
200862 |
taagctaggatgtactatgaattaagaagtaatctaggaagtaatagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtc |
200763 |
T |
|
| Q |
174 |
tttaaattaagaagtaatctaggaagtacctgtaactatgaagtac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
200762 |
tttaaattaagaagtaatctaggaagtacctgtaactatgaagtac |
200717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 200916 - 200842
Alignment:
| Q |
56 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
130 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
200916 |
gaacctctgtgattaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
200842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 28949236 - 28949091
Alignment:
| Q |
76 |
taagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtc |
173 |
Q |
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|||||||||| ||||||||||||||||||||||||| | || | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28949236 |
taagctaggatgtactatgaattaagaagtaatctaggaagtaatagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtc |
28949137 |
T |
|
| Q |
174 |
tttaaattaagaagtaatctaggaagtacctgtaactatgaagtac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28949136 |
tttaaattaagaagtaatctaggaagtacctgtaactatgaagtac |
28949091 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 22714979 - 22714834
Alignment:
| Q |
76 |
taagctaggaagtactatgaattaagaagtaatctaagctaggat--gta-ctatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgt |
172 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| | || || ||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22714979 |
taagataggatgtactatgaattaagaagtaatctagga-agtattagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgt |
22714881 |
T |
|
| Q |
173 |
ctttaaattaagaagtaatctaggaagtacctgtaactatgaagtac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22714880 |
ctttaaattaagaagtaatctaggaagtacctgtaactatgaagtac |
22714834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 22990246 - 22990391
Alignment:
| Q |
76 |
taagctaggaagtactatgaattaagaagtaatctaagctaggat--gta-ctatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgt |
172 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| | || || ||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
22990246 |
taagataggatgtactatgaattaagaagtaatctagga-agtattagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgt |
22990344 |
T |
|
| Q |
173 |
ctttaaattaagaagtaatctaggaagtacctgtaactatgaagtac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990345 |
ctttaaattaagaagtaatctaggaagtacctgtaactatgaagtac |
22990391 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 219
Target Start/End: Original strand, 46956533 - 46956701
Alignment:
| Q |
56 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtt---tagtctt |
150 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | || | ||||||||| | |||||| || ||||||| |
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|
| T |
46956533 |
gaacctgtgtgactaggaagtaagctagaaagtactatgaattaagaagtaatctaggaagtactagtaactatgaagcactgttatattatttagtctt |
46956632 |
T |
|
| Q |
151 |
taatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtac |
219 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
46956633 |
taatgttgtaatgttccattatctttaaattaagaagtaatctaggaagtactagtaactatcaagtac |
46956701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 219
Target Start/End: Original strand, 22696864 - 22697014
Alignment:
| Q |
71 |
ggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
168 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||| | || | ||||||||||| | || |||||||||||||||||||||||| || | |
|
|
| T |
22696864 |
ggaattaacctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactattttgtttagtctttaatgttgtaatgctctg |
22696963 |
T |
|
| Q |
169 |
ttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
22696964 |
ttgtctttaaattaagaagtaatctaggaagtaccggtaactttgaagtac |
22697014 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 28949290 - 28949216
Alignment:
| Q |
56 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
130 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
28949290 |
gaacctatgtgactaggaagtaagctaggaagtactatgagttaagaagcaatctaagctaggatgtactatgaa |
28949216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 22715033 - 22714959
Alignment:
| Q |
56 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
130 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22715033 |
gaacctctgtgattaggaagtaagttaggaagtactatgaattaagaagtaatctaagataggatgtactatgaa |
22714959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 22990192 - 22990266
Alignment:
| Q |
56 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
130 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22990192 |
gaacctctgtgattaggaagtaagttaggaagtactatgaattaagaagtaatctaagataggatgtactatgaa |
22990266 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 71 - 219
Target Start/End: Original strand, 22808084 - 22808234
Alignment:
| Q |
71 |
ggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
168 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22808084 |
ggaattaagctaggaagtactataaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
22808183 |
T |
|
| Q |
169 |
ttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtac |
219 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22808184 |
ttatctttaaattaagaagtaatctaggaagtactagtaactatgaagtac |
22808234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 219
Target Start/End: Original strand, 20087585 - 20087750
Alignment:
| Q |
56 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaa |
153 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | || | ||||||||||| |||||| |||||||||||| |
|
|
| T |
20087585 |
gaacttgtgtgactaggaagtaagctaggaagtcttatgaattaagaagtaatctaggaagtactagtaactatgaagtactgttatatttagtctttaa |
20087684 |
T |
|
| Q |
154 |
tgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtac |
219 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
20087685 |
tgttgtaatgttccgttatctttaaattaagaagtaatctagaaagtactagtaactatgaagtac |
20087750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 218
Target Start/End: Original strand, 19646298 - 19646447
Alignment:
| Q |
71 |
ggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
168 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| | || | ||||||||||| | ||||||||| |||||||||||||||||||| | |
|
|
| T |
19646298 |
ggaattaagctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactcttatgtttaatctttaatgttgtaatgttctg |
19646397 |
T |
|
| Q |
169 |
ttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
19646398 |
ttgtctttaaattaagaagtaatctaggaagtaccggtaactttgaagta |
19646447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 19646322 - 19646363
Alignment:
| Q |
178 |
aattaagaagtaatctaggaagtacctgtaactatgaagtac |
219 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
19646322 |
aattaagaagtaatctacgaagtactagtaactatgaagtac |
19646363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 219
Target Start/End: Complemental strand, 23362651 - 23362514
Alignment:
| Q |
84 |
gaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaatt |
181 |
Q |
| |
|
|||||||||||||||||||||||||||| | || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23362651 |
gaagtactatgaattaagaagtaatctacgaagtactagtaactattaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaatt |
23362552 |
T |
|
| Q |
182 |
aagaagtaatctaggaagtacctgtaactatgaagtac |
219 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23362551 |
aagaagtaatctaggaagtactaataactatgaagtac |
23362514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 218
Target Start/End: Original strand, 4344211 - 4344359
Alignment:
| Q |
71 |
ggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
168 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| | || | ||||||||||| ||||||||||||||||||||||| ||||||| || |
|
|
| T |
4344211 |
ggaattaagctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactgttatgtttagtctttaatgtt-taatgtttcg |
4344309 |
T |
|
| Q |
169 |
ttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
4344310 |
ttgtctttaaattaagaagtaatctaggaagtaccagtaactttgaagta |
4344359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 4344235 - 4344276
Alignment:
| Q |
178 |
aattaagaagtaatctaggaagtacctgtaactatgaagtac |
219 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
4344235 |
aattaagaagtaatctacgaagtactagtaactatgaagtac |
4344276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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