View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_424 (Length: 219)
Name: NF6876A_low_424
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_424 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 5173130 - 5172952
Alignment:
| Q |
21 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaattta |
120 |
Q |
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| T |
5173130 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagggacttcaattgaaattta |
5173031 |
T |
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| Q |
121 |
ggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattgg |
199 |
Q |
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| T |
5173030 |
ggaaaccactttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattgg |
5172952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 4842395 - 4842573
Alignment:
| Q |
21 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaattta |
120 |
Q |
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| T |
4842395 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagggacttcaattgaaattta |
4842494 |
T |
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| Q |
121 |
ggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattgg |
199 |
Q |
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| T |
4842495 |
ggaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaagattgg |
4842573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 5160213 - 5160077
Alignment:
| Q |
22 |
atcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttag |
121 |
Q |
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| T |
5160213 |
atcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttag |
5160114 |
T |
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| Q |
122 |
gaaaccattttgttttttcagtttcaatgtgtactcc |
158 |
Q |
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| T |
5160113 |
gaaaccactttgttttttcagtttcaatgtctactcc |
5160077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 5182464 - 5182286
Alignment:
| Q |
16 |
aagaatatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaa |
115 |
Q |
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| T |
5182464 |
aagaatatcaaattatattgatatgaaagaaaagtaggaatgacacctcctttctccttgtttaggttgcaatttctaagaatgagtgtcttcaattgaa |
5182365 |
T |
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| Q |
116 |
atttaggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagatt |
197 |
Q |
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| T |
5182364 |
atttgggaaaccactttgtcttttcagtttcaatgagaactcc---actgttttccggtgaaatatatagatgctgaagatt |
5182286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 4856867 - 4857045
Alignment:
| Q |
16 |
aagaatatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaa |
115 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4856867 |
aagaataccaaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccatgtttaggttgcaatttctaagaatgagtgtcttcaattgaa |
4856966 |
T |
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| Q |
116 |
atttaggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagatt |
197 |
Q |
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| T |
4856967 |
atttgggaaaccactttgtcttttcagtttcaatgagaactcc---actgttttccggtgaaatatatagatgctgaagatt |
4857045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 5195853 - 5195719
Alignment:
| Q |
24 |
caaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttagga |
123 |
Q |
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| T |
5195853 |
caaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaacaataagtgacttcaattgaaatttagga |
5195754 |
T |
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| Q |
124 |
aaccattttgttttttcagtttcaatgtgtactcc |
158 |
Q |
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| T |
5195753 |
aaccactttgttttttcagtttcaatgtctactcc |
5195719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 5214021 - 5213889
Alignment:
| Q |
19 |
aatatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatt |
118 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
5214021 |
aatatcaaactatattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttctaagaatgagtgtcttcaattgaaatt |
5213922 |
T |
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| Q |
119 |
taggaaaccattttgttttttcagtttcaatgt |
151 |
Q |
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| T |
5213921 |
tgggtaaccactttgtcttttcagtttcaatgt |
5213889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 7142390 - 7142257
Alignment:
| Q |
24 |
caaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttagga |
123 |
Q |
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|||||||| |||||| |||| |||| ||||||||||| |||||||||| ||||| ||||||||||| ||| || |||| | | ||||||| ||||| |
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| T |
7142390 |
caaattatgttgatatgaaaaaaaactaggaatgacatttcctttgtccatgttttggttgcaatttttaa-cataagtgtatgtagttgaaatctagga |
7142292 |
T |
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| Q |
124 |
aaccattttgttttttcagtttcaatgtgtactcc |
158 |
Q |
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||||| ||||| ||||||||||||| ||||||||| |
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| T |
7142291 |
aaccactttgtattttcagtttcaacgtgtactcc |
7142257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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