View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_427 (Length: 218)
Name: NF6876A_low_427
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_427 |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 33810918 - 33811094
Alignment:
| Q |
26 |
cacagaagcagagtacatcgcaatcactgaaggttgtaaggagatgatgtggatgaagaaattcctacaagagttaggccagaatcaagaaagttatgtt |
125 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| |
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| T |
33810918 |
cacagaagcagagtacatcgcaatcactgaaggctgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaatttatgtt |
33811017 |
T |
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| Q |
126 |
ctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacattgatgt |
202 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33811018 |
ctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgt |
33811094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 33815836 - 33816012
Alignment:
| Q |
26 |
cacagaagcagagtacatcgcaatcactgaaggttgtaaggagatgatgtggatgaagaaattcctacaagagttaggccagaatcaagaaagttatgtt |
125 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| |
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| T |
33815836 |
cacagaagcagagtacatcgcaatcactgaaggctgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaatttatgtt |
33815935 |
T |
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| Q |
126 |
ctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacattgatgt |
202 |
Q |
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| T |
33815936 |
ctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgt |
33816012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 4836541 - 4836369
Alignment:
| Q |
30 |
gaagcagagtacatcgcaatcactgaaggttgtaaggagatgatgtggatgaagaaattcctacaagagttaggccagaatcaagaaagttatgttctct |
129 |
Q |
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| T |
4836541 |
gaagctgaatacatcgcaatcactgaaggttgtaaggagatcctatggatgaagaagtttctacaagagttatgccagaatcaagaaagttatgttctct |
4836442 |
T |
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| Q |
130 |
attgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacattgatgt |
202 |
Q |
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| T |
4836441 |
attgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgt |
4836369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 54968211 - 54968035
Alignment:
| Q |
26 |
cacagaagcagagtacatcgcaatcactgaaggttgtaaggagatgatgtggatgaagaaattcctacaagagttaggccagaatcaagaaagttatgtt |
125 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| | |||||||||||||||| |
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| T |
54968211 |
cacagaagctgaatacatcgcaatcactgaaggttgtaaggagatcctgtggatgaagaagttcctgcaagagttaggccaaagtcaagaaagttatgtt |
54968112 |
T |
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| Q |
126 |
ctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacattgatgt |
202 |
Q |
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|||||||| || ||||| || |||||||| || |||||||| || |||||||| || || ||||||||||||||||| |
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| T |
54968111 |
ctctattgcgacagtcagagcgcaattcatctcagcaagaactcaacataccactccagatcaaaacacattgatgt |
54968035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 199
Target Start/End: Complemental strand, 22982137 - 22981967
Alignment:
| Q |
29 |
agaagcagagtacatcgcaatcactgaaggttgtaaggagatgatgtggatgaagaaattcctacaagagttaggccagaatcaagaaagttatgttctc |
128 |
Q |
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| T |
22982137 |
agaagctgaatacatcacaatcactgaaggttgtaaggagatcatgtggatgaagaagttcctgcaagagttaggccagaatcaaaaaagctatgttctc |
22982038 |
T |
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| Q |
129 |
tattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacattga |
199 |
Q |
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| T |
22982037 |
tattgcgacagtcagagtgcgattcatctcagcaagaactcgacataccactctagatcgaaacacattga |
22981967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 23806271 - 23806441
Alignment:
| Q |
29 |
agaagcagagtacatcgcaatcactgaaggttgtaaggagatgatgtggatgaagaaattcctacaagagttaggccagaatcaagaaagttatgttctc |
128 |
Q |
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|||||| || |||||| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||| |
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| T |
23806271 |
agaagctgaatacatcacaatcactgaaggttgtaaggagatcatgtggatgaagaagttcctgcaagagttaggccagaatcaaaaaagctatgttctc |
23806370 |
T |
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| Q |
129 |
tattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacattga |
199 |
Q |
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| T |
23806371 |
tattgcgacagtcagagtgcgattcatctcagcaagaactcgacataccactctagatcgaaacacattga |
23806441 |
T |
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Target: scaffold0479 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 1949 - 2112
Alignment:
| Q |
39 |
tacatcgcaatcactgaaggttgtaaggagatgatgtggatgaagaaattcctacaagagttaggccagaatcaagaaagttatgttctctattgtgata |
138 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| || | |
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| T |
1949 |
tacatcgcaatcactgaaggttgtaaggagatcctatggatgaagaagttcctacaagagttaggccaaaatcaagaaagctatgttctctattgcgaca |
2048 |
T |
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| Q |
139 |
gtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacattgatgt |
202 |
Q |
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||||||| || ||||| || |||||||| || ||||| || || || |||||||| |||||||| |
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| T |
2049 |
gtcaaagcgcgattcatctcagcaagaactcaacatatcactccagatcaaaacatattgatgt |
2112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 46 - 190
Target Start/End: Complemental strand, 25003790 - 25003647
Alignment:
| Q |
46 |
caatcactgaaggttgtaaggagatgatgtggatgaagaaattcctacaagagttaggccagaatcaagaaagttatgttctctattgtgatagtcaaag |
145 |
Q |
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|||||||| | |||||||||||||| |||||||||||| ||| | ||||||| ||||| ||||||| |||||||||||| |||||||||||||||||| |
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| T |
25003790 |
caatcactaacggttgtaaggagatcccgtggatgaagaagttcatgcaagagtcaggcctgaatcaacaaagttatgttccctattgtgatagtcaaag |
25003691 |
T |
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| Q |
146 |
tgcaattcaccttagcaagaattcgacataccattcaaggtcaaa |
190 |
Q |
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| T |
25003690 |
tgcaattcacctcagaaataactcgacata-caatcaaggtcaaa |
25003647 |
T |
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