View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_428 (Length: 217)
Name: NF6876A_low_428
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_428 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 4123108 - 4123305
Alignment:
| Q |
20 |
tcagtaaaaattaaaacaatgatatttggacaccccaattttccaaacactcatttaacacttcattttctctttatctctcttcctatcacatcaccaa |
119 |
Q |
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| T |
4123108 |
tcagtaaaaattaaaacaatgatatttggacaccccaattttccaaacactcatttaacacttcattttctctttatctctcttcctatcacatcaccaa |
4123207 |
T |
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| Q |
120 |
catatcaaatttatcacatcactcttgttatttctctctgtctctctcgcttaaggtgtttaggtgtctaccaaacattttcctaaaaattaaaatta |
217 |
Q |
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| T |
4123208 |
catatcaaatctatcacatcactcttgttatttctctctgtctctctcgcttaaggtgtttaggtgtctaccaaacattttcctaaaaattaaaatta |
4123305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 163
Target Start/End: Complemental strand, 4336712 - 4336581
Alignment:
| Q |
24 |
taaaaattaaaacaatgatatttggacaccccaattttccaaacactcatttaacacttcattttctctttatctctcttcctatcacatcaccaacata |
123 |
Q |
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| T |
4336712 |
taaaaattacaacaatgatatttggacaccccaattttcgaaacaatcattcagctcctcaatt--------tctctcttcctatcacatcatcaactta |
4336621 |
T |
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| Q |
124 |
tcaaatttatcacatcactcttgttatttctctctgtctc |
163 |
Q |
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| T |
4336620 |
tcaaatctatcacgttactctttctatttctttctctctc |
4336581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 3746505 - 3746561
Alignment:
| Q |
72 |
atttaacacttcattttctctttatctc--tcttcctatcacatcaccaacatatca |
126 |
Q |
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| T |
3746505 |
atttaacacttcattttctctctatctctatcttcttatcatatcaccaacctatca |
3746561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 2087329 - 2087391
Alignment:
| Q |
82 |
tcattttctctttatctctcttcctatcacatcaccaacatatcaaatttatcacatcactct |
144 |
Q |
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| T |
2087329 |
tcattttctctttatctctcttcctatcacattaacaatatatcacatttatcacattactct |
2087391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 36424734 - 36424650
Alignment:
| Q |
66 |
acactcatttaacacttcattttctctttatctctcttcctatcacatcaccaacatatcaaatttatcacatcactcttgttat |
150 |
Q |
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| T |
36424734 |
acacttatttaacattttattttctctttatttctcttcctatcacaccaactacacatcatatcaaacacatcacttttgttat |
36424650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 9233222 - 9233308
Alignment:
| Q |
38 |
atgatatttggacaccccaattttccaaacactcatttaacacttcattttctctttatctctcttcctatcacatcaccaacatat |
124 |
Q |
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| T |
9233222 |
atgatattttaacaccctaactttacatacactcattcaacacttcattttatcttcatctctcttcttatcacatcatcaacatat |
9233308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 31062194 - 31062264
Alignment:
| Q |
84 |
attttctctttatctctcttcctatcacatcaccaacatatcaaatttatcacatcactcttgttatttct |
154 |
Q |
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| T |
31062194 |
attttctatgtatctctctttctatcacatcaccaaaatatcatatttatcacatcattctttttgtttct |
31062264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 7566446 - 7566378
Alignment:
| Q |
63 |
caaacactcatttaacacttcattttctcttta--tctctcttcctatcacatcaccaacatatcaaat |
129 |
Q |
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| T |
7566446 |
caaacatttatttaacacttcattttctctctatctctctcttcctatcatatcatcaacctatcaaat |
7566378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 12045617 - 12045575
Alignment:
| Q |
71 |
catttaacacttcattttctctttatctctcttcctatcacat |
113 |
Q |
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| T |
12045617 |
cattcaacaattcattttctctatatctctcttcctatcacat |
12045575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 26683764 - 26683695
Alignment:
| Q |
72 |
atttaacacttcattttctctttatctctct--tcctatcacatcaccaacatatcaaatttatcacatc |
139 |
Q |
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| T |
26683764 |
atttaatacttcattttctctatatctctttactcctatcacatcactaatatataagatttatcacatc |
26683695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 10515864 - 10515804
Alignment:
| Q |
66 |
acactcatttaacacttcattttctctttatc--tctcttcctatcacatcaccaacatat |
124 |
Q |
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| T |
10515864 |
acactcgttcaacatttcattttctctttatctatctcttcctatcacatcatcaatatat |
10515804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 10659451 - 10659515
Alignment:
| Q |
51 |
accccaattttccaaacactcatttaacacttcattttctctttatctctcttcctatcacatca |
115 |
Q |
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| T |
10659451 |
accccaattttcctaacattcattcaacacatcatttaatctttatctctttttctattacatca |
10659515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 31659661 - 31659732
Alignment:
| Q |
66 |
acactcatttaacacttcattttctctttatctctcttcctatcacatcaccaacatatcaaatttatcacat |
138 |
Q |
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| T |
31659661 |
acacttattaaacacttcattttctgtatatctct-ttcttattatatcaccaatatatcatatttatcacat |
31659732 |
T |
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