View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_430 (Length: 217)
Name: NF6876A_low_430
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_430 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 45123216 - 45123006
Alignment:
| Q |
1 |
ataaaattcatatatatacttaaaatatttctgactgatgcatctggaaatacaaaaatcgagcttatatataagtatcactttgtttgttttgcacttc |
100 |
Q |
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| T |
45123216 |
ataaaattcagatatatacttaaaatatttctgattgatgtatcttgaaatacagaaatcgagcttatatataggtatcactttgtttgtcttgcacttc |
45123117 |
T |
|
| Q |
101 |
aagaaacaatattgtcacctacaagacttgtcaagcaataaagtaaataagtggaggaatcaccttgttcttcttgcaaagatcacgaaacaaccttgct |
200 |
Q |
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| T |
45123116 |
aagaaacaatattgtcacctacaagacttgtcaagcaataaagtaaacaagtggaggaatcatcttgttcttcttacaaagatcacgaaacaaccttgtt |
45123017 |
T |
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| Q |
201 |
tatcttgttct |
211 |
Q |
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||||||||||| |
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| T |
45123016 |
tatcttgttct |
45123006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 34980595 - 34980546
Alignment:
| Q |
118 |
cctacaagacttgtcaagcaataaagtaaataagtggaggaatcaccttg |
167 |
Q |
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| T |
34980595 |
cctacaagacttgccaagcaagaaagtaaacaagtgaaggaatcaccttg |
34980546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 15549684 - 15549756
Alignment:
| Q |
94 |
gcacttcaagaaacaatattgtcacctacaagacttgtcaagcaataaagtaaataagtggaggaatcacctt |
166 |
Q |
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| T |
15549684 |
gcacttcaagaaacaacattgtggcctacaatacttgtcatgcaagaaaggaaacaagtgaatgaaccacctt |
15549756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 12467149 - 12467205
Alignment:
| Q |
82 |
tttgtttgttttgcacttcaagaaacaatattgtcacctacaagacttgtcaagcaa |
138 |
Q |
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| T |
12467149 |
tttgtttgtcttgcacttcaagaaacaagcttgtggcctacaaaacttatcaagcaa |
12467205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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