View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_439 (Length: 213)

Name: NF6876A_low_439
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_439
NF6876A_low_439
[»] chr7 (14 HSPs)
chr7 (50-197)||(39931133-39931281)
chr7 (69-197)||(36363991-36364119)
chr7 (111-197)||(17721152-17721238)
chr7 (111-197)||(234975-235061)
chr7 (111-197)||(4937665-4937751)
chr7 (111-197)||(47877500-47877585)
chr7 (114-197)||(31423122-31423205)
chr7 (111-197)||(11276785-11276871)
chr7 (114-197)||(37255278-37255361)
chr7 (111-197)||(29968491-29968577)
chr7 (125-197)||(25018855-25018927)
chr7 (133-196)||(17504097-17504160)
chr7 (133-196)||(17549054-17549117)
chr7 (145-197)||(6335941-6335993)
[»] chr8 (14 HSPs)
chr8 (93-193)||(38046857-38046957)
chr8 (111-197)||(9923118-9923204)
chr8 (111-197)||(172576-172662)
chr8 (111-197)||(7924903-7924989)
chr8 (111-197)||(8300320-8300406)
chr8 (114-197)||(13879024-13879107)
chr8 (111-197)||(20824816-20824902)
chr8 (111-197)||(41664905-41664991)
chr8 (57-159)||(43283248-43283350)
chr8 (114-197)||(25090907-25090990)
chr8 (125-197)||(36492912-36492984)
chr8 (115-192)||(37165663-37165740)
chr8 (114-159)||(42177127-42177172)
chr8 (125-197)||(4310379-4310451)
[»] chr4 (20 HSPs)
chr4 (114-197)||(55725243-55725326)
chr4 (111-197)||(1828077-1828163)
chr4 (114-197)||(11586735-11586818)
chr4 (114-197)||(48312614-48312697)
chr4 (111-197)||(15740737-15740823)
chr4 (111-197)||(19755784-19755870)
chr4 (111-197)||(19783936-19784022)
chr4 (111-197)||(23642128-23642214)
chr4 (111-197)||(23647786-23647872)
chr4 (111-197)||(47419321-47419407)
chr4 (112-197)||(5789629-5789714)
chr4 (114-197)||(54482696-54482779)
chr4 (111-158)||(19735311-19735358)
chr4 (111-197)||(46146194-46146280)
chr4 (119-159)||(23657822-23657862)
chr4 (115-190)||(36183058-36183133)
chr4 (119-159)||(8935599-8935639)
chr4 (125-197)||(19162714-19162786)
chr4 (125-197)||(40688597-40688669)
chr4 (145-197)||(54685161-54685213)
[»] chr2 (10 HSPs)
chr2 (71-197)||(37445570-37445696)
chr2 (111-197)||(28253237-28253323)
chr2 (114-197)||(33515744-33515827)
chr2 (115-197)||(14440265-14440347)
chr2 (114-159)||(12646056-12646101)
chr2 (125-197)||(13416202-13416274)
chr2 (125-197)||(43310790-43310862)
chr2 (97-159)||(15018180-15018242)
chr2 (164-197)||(12646091-12646124)
chr2 (125-197)||(26146746-26146818)
[»] scaffold1350 (1 HSPs)
scaffold1350 (108-197)||(58-147)
[»] chr5 (20 HSPs)
chr5 (111-197)||(28535212-28535298)
chr5 (111-197)||(31642028-31642114)
chr5 (111-197)||(42514237-42514323)
chr5 (111-190)||(30731858-30731937)
chr5 (98-197)||(33170162-33170261)
chr5 (111-197)||(8299719-8299805)
chr5 (111-197)||(27116710-27116796)
chr5 (111-197)||(35983328-35983414)
chr5 (111-197)||(42928648-42928734)
chr5 (111-197)||(23238900-23238986)
chr5 (119-197)||(27796009-27796087)
chr5 (111-159)||(27165525-27165573)
chr5 (111-189)||(12825716-12825794)
chr5 (125-197)||(41590627-41590699)
chr5 (97-159)||(22094825-22094887)
chr5 (164-197)||(27165502-27165535)
chr5 (125-197)||(4297846-4297918)
chr5 (133-197)||(10780740-10780804)
chr5 (111-159)||(25856999-25857047)
chr5 (125-197)||(36256309-36256381)
[»] chr6 (18 HSPs)
chr6 (108-181)||(10922067-10922140)
chr6 (112-197)||(18682111-18682196)
chr6 (114-197)||(14372528-14372611)
chr6 (111-197)||(2554123-2554209)
chr6 (111-197)||(17605871-17605957)
chr6 (114-197)||(10576787-10576870)
chr6 (111-197)||(13938236-13938322)
chr6 (70-144)||(5041993-5042066)
chr6 (119-159)||(5085601-5085641)
chr6 (125-197)||(15602855-15602927)
chr6 (117-197)||(17577255-17577335)
chr6 (164-197)||(15956528-15956561)
chr6 (147-196)||(18588902-18588951)
chr6 (98-159)||(24767004-24767065)
chr6 (115-196)||(26514245-26514326)
chr6 (119-159)||(503107-503147)
chr6 (119-159)||(8264748-8264788)
chr6 (165-197)||(24766951-24766983)
[»] chr3 (13 HSPs)
chr3 (114-197)||(19891197-19891280)
chr3 (111-197)||(2364794-2364880)
chr3 (114-197)||(48569576-48569659)
chr3 (111-197)||(10323108-10323194)
chr3 (111-197)||(19919766-19919852)
chr3 (111-197)||(34332352-34332438)
chr3 (98-197)||(962700-962799)
chr3 (117-197)||(12341792-12341872)
chr3 (125-197)||(52250661-52250733)
chr3 (111-197)||(3141368-3141454)
chr3 (111-197)||(16179464-16179550)
chr3 (108-197)||(20531588-20531677)
chr3 (125-197)||(8130482-8130554)
[»] scaffold0034 (1 HSPs)
scaffold0034 (111-197)||(105380-105466)
[»] chr1 (4 HSPs)
chr1 (111-197)||(6051120-6051206)
chr1 (111-197)||(47622614-47622700)
chr1 (164-197)||(35541604-35541637)
chr1 (111-159)||(35541566-35541614)
[»] scaffold0472 (1 HSPs)
scaffold0472 (111-197)||(3769-3855)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 39931281 - 39931133
Alignment:
Q  50 ccaaaaagacacccacgacgcaaaccacccatcactcc-tacctccaaccccatcccggattctcactatctcccaccaccaacaagaacaacttcggcc 148  Q
    |||||||||||| |||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  39931281 ccaaaaagacacacacgacacaaaccacccatcactccctaccttcaaccccatcccgaattctcactatctcccaccaccaacaagaacaactccggcc 39931182  T
Q  149 cccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39931181 cccatcctccaaccgcccatcctccacaccatacctagccaccaacacc 39931133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 36363991 - 36364119
Alignment:
Q  69 gcaaaccacccatcactcctacctccaaccccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccat 168  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||| |     ||    
T  36363991 gcaaaccacccatcaccactacctcctaccccatcccggattctcactatctccctccatcaagaagaacaacttcggccctcatcctccaactatttat 36364090  T
Q  169 cctccacaccatacctagccaccaacacc 197  Q
    |||||||||| || |||||||||||||||    
T  36364091 cctccacaccttaactagccaccaacacc 36364119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 17721152 - 17721238
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| ||||||||||||||||||||||||||    
T  17721152 ctcactatctccctccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccaccaacacc 17721238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 235061 - 234975
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| ||||||||||||||||||| ||||||    
T  235061 ctcactatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccactaacacc 234975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 4937751 - 4937665
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| ||||||    
T  4937751 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacc 4937665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 47877500 - 47877585
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||  |||||||||| ||||||| ||||||||  |  |||||| ||||||||||||||||||||||||||    
T  47877500 ctcactatctccctccaccacgaagaacaactccggcccc-atcctccaaacctccatccgccacaccatacctagccaccaacacc 47877585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 31423122 - 31423205
Alignment:
Q  114 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||||| | ||||  |||||||||| ||||||||||||||||  |  |||||| ||||||||| ||||||||||||||||    
T  31423122 actatctccctcaaccacgaagaacaactccggcccccatcctccaaaccaccatccgccacaccatgcctagccaccaacacc 31423205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 11276871 - 11276785
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||  | |||||||| ||| ||||||||||||  |  |||||| ||||||||||||||||||| ||||||    
T  11276871 ctcactatctccctccaccacgacgaacaactccgggccccatcctccaaacctccatccgccacaccatacctagccactaacacc 11276785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 37255278 - 37255361
Alignment:
Q  114 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||||| ||| ||  | |||||||| | ||||||||||||||  |  |||||| ||||||||||||||||||||||||||    
T  37255278 actatctccctccatcacgatgaacaactccagcccccatcctccaaaccaccatccgccacaccatacctagccaccaacacc 37255361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 29968491 - 29968577
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||  | |||||||| |||||| |||||||||  |  |||||| |||| |||||||||||||| ||||||    
T  29968491 ctcactatctccctccaccacgacgaacaactccggcccgcatcctccaaacctccatccgccacgccatacctagccactaacacc 29968577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 25018927 - 25018855
Alignment:
Q  125 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||| |||||| |||||| |||||| |||||| || |||| ||||| ||||||| || ||||||||||||    
T  25018927 ccaccaagaagaaccacttcgacccccaacctccaacctcccagcctcctcaccatatcttgccaccaacacc 25018855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 17504160 - 17504097
Alignment:
Q  133 aagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacac 196  Q
    |||||| ||| |||||||||||||||| || |||||||||| |||| || || |||||||||||    
T  17504160 aagaaccactccggcccccatcctccaacctcccatcctcctcaccgtatctcgccaccaacac 17504097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 17549054 - 17549117
Alignment:
Q  133 aagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacac 196  Q
    |||||| ||| |||||||||||||||| || |||||||||| |||| || || |||||||||||    
T  17549054 aagaaccactccggcccccatcctccaacctcccatcctcctcaccgtatctcgccaccaacac 17549117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 6335993 - 6335941
Alignment:
Q  145 ggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||||| || ||||||   ||||||||||||||| |||||||||    
T  6335993 ggcccccatcctccaacctcccatcgcgcacaccatacctagcaaccaacacc 6335941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 38046857 - 38046957
Alignment:
Q  93 ccaaccccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccacca 192  Q
    ||||| ||| |||| ||||| |||||||||| ||| ||  ||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||    
T  38046857 ccaacaccaccccgaattctaactatctccctccatcacgaagaacaacttcggcccccatcctccaacctcccatcctccacaccatacctagcaacca 38046956  T
Q  193 a 193  Q
    |    
T  38046957 a 38046957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 9923118 - 9923204
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| ||||||||||||||||||||||||||    
T  9923118 ctcactatctccctccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccaccaacacc 9923204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 172662 - 172576
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| ||||||    
T  172662 ctcacgatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacc 172576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 7924903 - 7924989
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| ||||||    
T  7924903 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacc 7924989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 8300320 - 8300406
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| ||||||    
T  8300320 ctcacgatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacc 8300406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 13879107 - 13879024
Alignment:
Q  114 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||||| ||||||  ||||||||||  |||||||||||||||  |  |||||| ||||||||||||||||||||||||||    
T  13879107 actatctccctccaccacgaagaacaactctggcccccatcctccaaaccaccatccgccacaccatacctagccaccaacacc 13879024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 20824816 - 20824902
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  ||||||||||| ||||||||||||| |||||||    
T  20824816 ctcacaatctccctccaccacaaagaacaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaacaacacc 20824902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 41664991 - 41664905
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||  ||||||  |||||||||| ||||||||||||||||  |  |||||| ||||||||||||||||||| ||||||    
T  41664991 ctcactatctccatccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccactaacacc 41664905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 159
Target Start/End: Complemental strand, 43283350 - 43283248
Alignment:
Q  57 gacacccacgacgcaaaccacccatcactcctacctccaaccccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcct 156  Q
    ||||| ||||| |||||||||| ||||   ||| | |||||| ||||||  |||||||||||||||| |||||||||||||||||| ||||  |||||||    
T  43283350 gacacacacgaagcaaaccacctatcataactaacaccaacctcatcccaaattctcactatctccctccaccaacaagaacaactccggcttccatcct 43283251  T
Q  157 cca 159  Q
    |||    
T  43283250 cca 43283248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 25090907 - 25090990
Alignment:
Q  114 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||||| ||||||  ||||||| || ||||||||||||||||  |  |||||| ||||||||||| ||||||||||||||    
T  25090907 actatctccctccaccacgaagaacagctccggcccccatcctccaaaccaccatccgccacaccatacatagccaccaacacc 25090990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 36492912 - 36492984
Alignment:
Q  125 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||| ||||||  || ||||||||| || ||| || |||||||||| |||||||||| ||||||||||||    
T  36492912 ccaccaagaagaacctctccggcccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacacc 36492984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 37165740 - 37165663
Alignment:
Q  115 ctatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccacca 192  Q
    ||||||||| |||||||  ||||  ||| ||||||||| |||||| ||||||||||||| | ||||| || |||||||    
T  37165740 ctatctccctccaccaagtagaaacactccggcccccaacctccaaccgcccatcctcctcgccatatctcgccacca 37165663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 42177172 - 42177127
Alignment:
Q  114 actatctcccaccaccaacaagaacaacttcggcccccatcctcca 159  Q
    |||||||||| ||||||  ||||||||||||||||| |||||||||    
T  42177172 actatctccctccaccacgaagaacaacttcggcccgcatcctcca 42177127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 4310451 - 4310379
Alignment:
Q  125 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||| |||||| ||| |||||||||||||||| || |||||||   ||| |||| ||||| |||||||||    
T  4310451 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacatcatatctagcaaccaacacc 4310379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 55725326 - 55725243
Alignment:
Q  114 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||||||||||    
T  55725326 actatctccctccaccaagaagaacaactccggcccccatcctccaaaccaccatcctccacaccatacctagccaccaacacc 55725243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 1828163 - 1828077
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||| |||  |  |||||||||||||||||||||||||| ||||||    
T  1828163 ctcactatctcccgccaccaagaagaacaactccggcccccatccgccaaacctccatcctccacaccatacctagccactaacacc 1828077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 11586818 - 11586735
Alignment:
Q  114 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||  |  |||||| ||||||||||||||||||| ||||||    
T  11586818 actatctccctccaccaagaagaacaacttcggcccccattctccaaacctccatccgccacaccatacctagccactaacacc 11586735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 48312614 - 48312697
Alignment:
Q  114 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| ||||||||||||||||||||||||||    
T  48312614 actatctccctccaccacgaagaacaactccggcccccatcctccaaaccaccatccgccacaccatacctagccaccaacacc 48312697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 15740737 - 15740823
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||  |||||||||| |||||||||||| |||  |  |||||||||||||||||||||||||| ||||||    
T  15740737 ctcactatctcccgccaccatgaagaacaactccggcccccatccgccaaacctccatcctccacaccatacctagccactaacacc 15740823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 19755784 - 19755870
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| ||||||||||||||||||| ||||||    
T  19755784 ctcactatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccactaacacc 19755870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 19784022 - 19783936
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| ||||||||||||||||||| ||||||    
T  19784022 ctcactatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccactaacacc 19783936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 23642214 - 23642128
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| ||||||    
T  23642214 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacc 23642128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 23647872 - 23647786
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| ||||||    
T  23647872 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacc 23647786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 47419321 - 47419407
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| ||||||    
T  47419321 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacc 47419407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 5789714 - 5789629
Alignment:
Q  112 tcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||| ||||||| ||||||| |||||||||| ||||||||||||||||  |  ||| |||||||||||||||||||||| ||||||    
T  5789714 tcacaatctcccgccaccaagaagaacaactccggcccccatcctccaaacctccaccctccacaccatacctagccactaacacc 5789629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 54482779 - 54482696
Alignment:
Q  114 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||||| ||||||  |||||||||| || |||||||||||||  |  |||||  ||||||||||||||||||||||||||    
T  54482779 actatctccctccaccacgaagaacaactccgacccccatcctccaaaccaccatctgccacaccatacctagccaccaacacc 54482696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 19735358 - 19735311
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctcc 158  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||||||    
T  19735358 ctcactatctcccgccaccaagaagaacaactccggcccccatcctcc 19735311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 46146194 - 46146280
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||| | |||||||| |||||||||| |||||  |  |||||| |  ||||||| |||||||||||||||    
T  46146194 ctcactatctcccgccaccaagatgaacaactccggcccccattctccaaaccaccatccgctgcaccatatctagccaccaacacc 46146280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 23657822 - 23657862
Alignment:
Q  119 ctcccaccaccaacaagaacaacttcggcccccatcctcca 159  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  23657822 ctcccgccaccaagaagaacaacttcggcccccatcctcca 23657862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 36183058 - 36183133
Alignment:
Q  115 ctatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccac 190  Q
    ||||||||| |||||||  ||||  ||| ||||||||| |||||| ||||||||||||| ||||||| || |||||    
T  36183058 ctatctccctccaccaagtagaaacactccggcccccaacctccaaccgcccatcctcctcaccatatcttgccac 36183133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 8935599 - 8935639
Alignment:
Q  119 ctcccaccaccaacaagaacaacttcggcccccatcctcca 159  Q
    ||||| ||||||| |||||||||| ||||||||||||||||    
T  8935599 ctcccgccaccaagaagaacaactccggcccccatcctcca 8935639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 19162786 - 19162714
Alignment:
Q  125 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||| |||||| ||| |||||||||||||||| || ||| |||   |||||||| ||||| |||||||||    
T  19162786 ccaccaaaaagaaccactccggcccccatcctccaacctcccgtccctaacaccatatctagcaaccaacacc 19162714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 40688597 - 40688669
Alignment:
Q  125 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||| |||||| ||| |||||||||||||||| || |||||||   |||||||| ||| | |||||||||    
T  40688597 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctaccaaccaacacc 40688669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 54685161 - 54685213
Alignment:
Q  145 ggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||||| || ||||||   ||||||||||||||| |||||||||    
T  54685161 ggcccccatcctccaacctcccatcacgcacaccatacctagcaaccaacacc 54685213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 37445570 - 37445696
Alignment:
Q  71 aaaccacccatcactcctacctccaaccccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcc 170  Q
    ||||||||||||||  |||||||  | ||| ||||| ||||||||   ||||||||||||  |||||||||| |||||||||||||||| || ||  |||    
T  37445570 aaaccacccatcaccactacctcttatcccgtcccgaattctcacacactcccaccaccacgaagaacaactccggcccccatcctccaacctcctgtcc 37445669  T
Q  171 tccacaccatacctagccaccaacacc 197  Q
    ||| |||||||||||||||||||||||    
T  37445670 tccgcaccatacctagccaccaacacc 37445696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 28253237 - 28253323
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||||  |  |||||| |||||||||||||||||  |||||||    
T  28253237 ctcactatctccctccaccaagaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccctcaacacc 28253323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 33515827 - 33515744
Alignment:
Q  114 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||||| ||||||  ||||||| || || |||||||||||||  |  |||||| ||||||||||||||||||||||||||    
T  33515827 actatctccctccaccacgaagaacagctccgacccccatcctccaaaccaccatccgccacaccatacctagccaccaacacc 33515744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 14440265 - 14440347
Alignment:
Q  115 ctatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| ||| |||||||||||||| |||||||    
T  14440265 ctatctccctccaccacgaagaacaactccggcccccatcctccaaaccaccatccgccataccatacctagccaacaacacc 14440347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 12646056 - 12646101
Alignment:
Q  114 actatctcccaccaccaacaagaacaacttcggcccccatcctcca 159  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||||    
T  12646056 actatctccctccaccaagaagaacaactccggcccccatcctcca 12646101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 13416202 - 13416274
Alignment:
Q  125 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||  ||||| ||| |||||||||||||||| || ||||||   ||||||||||||||| |||||||||    
T  13416202 ccaccaaatagaaccactccggcccccatcctccaacctcccatcacgcacaccatacctagcaaccaacacc 13416274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 43310790 - 43310862
Alignment:
Q  125 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||| |||||| ||| ||||||||| |||||| || |||||||||| | ||||| || ||||||||||||    
T  43310790 ccaccaagaagaaccactccggcccccaacctccaacctcccatcctcctcgccatatctcgccaccaacacc 43310862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 15018180 - 15018242
Alignment:
Q  97 ccccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcctcca 159  Q
    |||||||||  || ||| ||| ||||| ||||||| |||||||||||||||||||| ||||||    
T  15018180 ccccatccctaatcctccctacctcccgccaccaagaagaacaacttcggcccccaacctcca 15018242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 12646091 - 12646124
Alignment:
Q  164 cccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||||| ||||||||||||||||||    
T  12646091 cccatcctccacaccttacctagccaccaacacc 12646124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 26146746 - 26146818
Alignment:
Q  125 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||| || ||| ||| ||||||||| |||||| || |||||||||| | ||||| || ||||||||||||    
T  26146746 ccaccaagaataaccactccggcccccaacctccaacctcccatcctcctcgccatatctcgccaccaacacc 26146818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 58 - 147
Alignment:
Q  108 attctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| |||||||||| ||||||| |||| ||||||||||||||||||||||  |  ||||||||||||||||||||| |||||||||||    
T  58 attctgactatctccctccaccaagaagagcaacttcggcccccatcctccaaaccaccatcctccacaccatacctaaccaccaacacc 147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 28535298 - 28535212
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| ||||||||||||||||||||||||||    
T  28535298 ctcactatctccctccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccaccaacacc 28535212  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 31642028 - 31642114
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| |||||||||| |||||||||||||||    
T  31642028 ctcactatctcccgccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatatctagccaccaacacc 31642114  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 42514237 - 42514323
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| ||||||    
T  42514237 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaactgccatcctccacaccatacctagccactaacacc 42514323  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 30731937 - 30731858
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccac 190  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  ||||||||||||||||||||||||||    
T  30731937 ctcacaatctccctccaccatgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccac 30731858  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 33170162 - 33170261
Alignment:
Q  98 cccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||  || ||||||||||||| ||||||| | |||||||| ||||||||||||||||  |  |||||| || |||||||||||||||| ||||||    
T  33170162 cccatccctaatcctcactatctcccgccaccaagatgaacaactccggcccccatcctccaaaccaccatccgccgcaccatacctagccactaacacc 33170261  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 8299805 - 8299719
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  ||||||||||| ||||||||||||| |||||||    
T  8299805 ctcacaatctccctccaccacaaagaacaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaacaacacc 8299719  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 27116796 - 27116710
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  ||||||||||| |||||||||||||| ||||||    
T  27116796 ctcacgatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacgccatacctagccactaacacc 27116710  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 35983414 - 35983328
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| || |||||||||||||||||||||||    
T  35983414 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgcctcaccatacctagccaccaacacc 35983328  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 42928648 - 42928734
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||||| || ||||||  |||||||||| ||||||||||||||||  |  |||||| ||||| ||||||||||||||||||||    
T  42928648 ctcactatctgcctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacatcatacctagccaccaacacc 42928734  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 23238900 - 23238986
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||  | |||||||| ||||||||| ||||||  |  |||||| ||||||||||||||||||| ||||||    
T  23238900 ctcactatctccctccaccacgacgaacaactccggcccccaacctccaaacctccatccgccacaccatacctagccactaacacc 23238986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 27796009 - 27796087
Alignment:
Q  119 ctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||  ||||||||||  |||||||||||||||  |  |||||| ||||||||||||||||||||||||||    
T  27796009 ctccctccaccacgaagaacaactctggcccccatcctccaaaccaccatccgccacaccatacctagccaccaacacc 27796087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 27165573 - 27165525
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctcca 159  Q
    |||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  27165573 ctcattatctccctccaccaagaagaacaacttcggcccccatcctcca 27165525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 12825716 - 12825794
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagcca 189  Q
    ||||| ||||||| ||||||  ||||||||||  | |||||||||||||  |  |||||||||||||||||||||||||    
T  12825716 ctcacaatctccctccaccacgaagaacaactctgacccccatcctccaaactgccatcctccacaccatacctagcca 12825794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 41590627 - 41590699
Alignment:
Q  125 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||| ||||||  || ||||||||| || ||| || |||||||||| |||||||||| ||||||||||||    
T  41590627 ccaccaagaagaacctctccggcccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacacc 41590699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 22094887 - 22094825
Alignment:
Q  97 ccccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcctcca 159  Q
    |||||||||  |||||| | | ||||| ||||||  |||||||||||||||||||||||||||    
T  22094887 ccccatccctaattctccccacctcccgccaccacgaagaacaacttcggcccccatcctcca 22094825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 27165535 - 27165502
Alignment:
Q  164 cccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||||||||||||||||    
T  27165535 cccatcctccacaacatacctagccaccaacacc 27165502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 4297918 - 4297846
Alignment:
Q  125 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||| ||||||  || ||| ||||| || ||| || |||||||||| |||||||||| ||||||||||||    
T  4297918 ccaccaagaagaacctctccgggccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacacc 4297846  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 10780740 - 10780804
Alignment:
Q  133 aagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||| ||||| ||||||||||||||||  |  |||||| |||| ||||||||||||| |||||||    
T  10780740 aagagcaactccggcccccatcctccaaaccaccatccgccactccatacctagccaacaacacc 10780804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 25857047 - 25856999
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctcca 159  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||    
T  25857047 ctcacaatctccctccaccacaaagaacaactccggcccccatcctcca 25856999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 36256309 - 36256381
Alignment:
Q  125 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||| |||||| ||| |||||||||||||||| || |||||||   |||||||| ||| | |||||||||    
T  36256309 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctaacaaccaacacc 36256381  T

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Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 10922067 - 10922140
Alignment:
Q  108 attctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccata 181  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||||||| |||||  |||||||||||||||||    
T  10922067 attctcactatctccctccaccaagaagaacaactccggcccccatccttcagccttccatcctccacaccata 10922140  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 18682196 - 18682111
Alignment:
Q  112 tcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||  |  |||||||||  ||||||||| ||||||||||||    
T  18682196 tcactatctcccgccaccaagaagaacaactccggcccccatcctccaaacctccatcctccgaaccatacctggccaccaacacc 18682111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 14372611 - 14372528
Alignment:
Q  114 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||||  |   | ||| ||||||||||||||||||||||||||    
T  14372611 actatctccctccaccaagaagaacaactccggcccccatcctccaaactttcgtccgccacaccatacctagccaccaacacc 14372528  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 2554123 - 2554209
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||| |||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| ||||||||||||||||||| ||||||    
T  2554123 ctcattatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccactaacacc 2554209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 17605957 - 17605871
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| |||| || |||||||||| ||||||||||||||||  |  ||||||||||| ||||||||||||| |||||||    
T  17605957 ctcacaatctccctccacaaagaagaacaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaacaacacc 17605871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 10576870 - 10576787
Alignment:
Q  114 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||||| ||||||  |||| ||||| ||||||||||||||||  |  |||||| |||||||||||||||||| |||||||    
T  10576870 actatctccctccaccacgaagagcaactccggcccccatcctccaaaccaccatccgccacaccatacctagccaacaacacc 10576787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 13938236 - 13938322
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||  ||||||| | |||||||| ||||||||||||||||  |  |||||| || |||||||||||||||| ||||||    
T  13938236 ctcactatctcctgccaccaagatgaacaactccggcccccatcctccaaaccaccatccgccgcaccatacctagccactaacacc 13938322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 5041993 - 5042066
Alignment:
Q  70 caaaccacccatcactcctacctccaaccccatcccggattctcactatctcccaccaccaacaagaacaacttc 144  Q
    |||||||||| ||||  |||||| | |||||||| ||||||||||||||||||| ||||||| ||||| ||||||    
T  5041993 caaaccaccc-tcacgactaccttctaccccatctcggattctcactatctccctccaccaaaaagaataacttc 5042066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 5085641 - 5085601
Alignment:
Q  119 ctcccaccaccaacaagaacaacttcggcccccatcctcca 159  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  5085641 ctcccgccaccaagaagaacaacttcggcccccatcctcca 5085601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 15602855 - 15602927
Alignment:
Q  125 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||  ||||| ||| |||||||||||||||| || ||||||   ||||||||||||||| |||||||||    
T  15602855 ccaccaaatagaaccactccggcccccatcctccaacctcccatcacgcacaccatacctagcaaccaacacc 15602927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 17577335 - 17577255
Alignment:
Q  117 atctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||| ||||||  ||||||||||  |||||||||||||||  |   |||||||||| ||||||||||||| |||||||    
T  17577335 atctccctccaccacaaagaacaactctggcccccatcctccaaaccatcatcctccacgccatacctagccaacaacacc 17577255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 15956561 - 15956528
Alignment:
Q  164 cccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||| ||||||||||||||||||||||||||    
T  15956561 cccatccgccacaccatacctagccaccaacacc 15956528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 18588902 - 18588951
Alignment:
Q  147 cccccatcctccagccgcccatcctccacaccatacctagccaccaacac 196  Q
    ||||||||||||| || ||| |||||| ||||||| ||||||||||||||    
T  18588902 cccccatcctccaacctcccgtcctcctcaccatatctagccaccaacac 18588951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 24767065 - 24767004
Alignment:
Q  98 cccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcctcca 159  Q
    ||||||||  || ||||||||||||| ||||||  |||||||||| || |||||||||||||    
T  24767065 cccatccctaatcctcactatctccctccaccacgaagaacaactccgacccccatcctcca 24767004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 26514245 - 26514326
Alignment:
Q  115 ctatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacac 196  Q
    ||||||||| |||||||  ||||| ||| ||||||||| ||||||  | |||  ||||| ||||||||| ||||||||||||    
T  26514245 ctatctccctccaccaaatagaaccactccggcccccaacctccaaactccctgcctcctcaccataccgagccaccaacac 26514326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 503147 - 503107
Alignment:
Q  119 ctcccaccaccaacaagaacaacttcggcccccatcctcca 159  Q
    ||||| ||||||| |||||||||| ||||||||||||||||    
T  503147 ctcccgccaccaagaagaacaactccggcccccatcctcca 503107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 8264748 - 8264788
Alignment:
Q  119 ctcccaccaccaacaagaacaacttcggcccccatcctcca 159  Q
    ||||| ||||||| |||||||||| ||||||||||||||||    
T  8264748 ctcccgccaccaagaagaacaactccggcccccatcctcca 8264788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 24766983 - 24766951
Alignment:
Q  165 ccatcctccacaccatacctagccaccaacacc 197  Q
    |||||| ||||||||||||||||||||||||||    
T  24766983 ccatccgccacaccatacctagccaccaacacc 24766951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 19891197 - 19891280
Alignment:
Q  114 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||||| ||||||  |||||||||||||||||||||||||||  |  |||||  ||||||||||||||||||||||||||    
T  19891197 actatctccctccaccacgaagaacaacttcggcccccatcctccaaaccaccatctgccacaccatacctagccaccaacacc 19891280  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 2364794 - 2364880
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| ||||||    
T  2364794 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacc 2364880  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 48569659 - 48569576
Alignment:
Q  114 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||||| | ||||  ||||||| |||||||||||||||||||  |  |||||| ||||||||||||||||||||||||||    
T  48569659 actatctccctctaccacgaagaacagcttcggcccccatcctccaaaccaccatccgccacaccatacctagccaccaacacc 48569576  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 10323194 - 10323108
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  ||||| |||| ||||||||||||||||  |  |||||||||||||||||||||||||| ||||||    
T  10323194 ctcacaatctccctccaccacgaagaataactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacc 10323108  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 19919852 - 19919766
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |   ||||||||||||||||||||||||| ||||||    
T  19919852 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgtcatcctccacaccatacctagccactaacacc 19919766  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 34332438 - 34332352
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||  |||||||||| | ||||||||||||||  |  |||||| ||||||||||||||||||| ||||||    
T  34332438 ctcactatctccctccaccacgaagaacaactcccgcccccatcctccaaacctccatccgccacaccatacctagccactaacacc 34332352  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 962799 - 962700
Alignment:
Q  98 cccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||  || ||||||||||||| ||||||| | |||||||| || |||||||||||||  |  |||||| || |||||||||||||||| ||||||    
T  962799 cccatccctaatcctcactatctccctccaccaagatgaacaactccgacccccatcctccaaaccaccatccgccccaccatacctagccactaacacc 962700  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 12341872 - 12341792
Alignment:
Q  117 atctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||| ||||||  |||| ||||| ||||||||||||||||  |  ||||||||||| ||||||||||||| |||||||    
T  12341872 atctccctccaccacgaagagcaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaacaacacc 12341792  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 52250733 - 52250661
Alignment:
Q  125 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||| |||||| ||| ||||||||| |||||| || |||||||||| ||||||| || ||||||||||||    
T  52250733 ccaccaagaagaaccactccggcccccaacctccaacctcccatcctcctcaccatatctcgccaccaacacc 52250661  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 3141368 - 3141454
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||| | |||||| | ||||||||||||||||     |||||| || |||||||||||||||| ||||||    
T  3141368 ctcactatctcccgccaccaagatgaacaattccggcccccatcctccaaatcaccatccgccgcaccatacctagccactaacacc 3141454  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 16179464 - 16179550
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||| |||||||||| ||||||||||||||||  |  ||| | || ||||||||||| ||||| ||||||    
T  16179464 ctcacaatctcccgccaccaagaagaacaactccggcccccatcctccaaacctccaccgtctacaccatacctcgccactaacacc 16179550  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 20531677 - 20531588
Alignment:
Q  108 attctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    |||||||||||||||| ||||||| ||||| |||| |  |||||||| ||||  |  ||||||||| || |||||||||| |||||||||    
T  20531677 attctcactatctccctccaccaagaagaataactccaacccccatcttccaaacctccatcctccgcagcatacctagctaccaacacc 20531588  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 8130482 - 8130554
Alignment:
Q  125 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||| |||||| ||| ||||||||| |||||| || ||||||   ||||||||||||||| |||||||||    
T  8130482 ccaccaaaaagaaccactccggcccccaacctccaacctcccatcacgcacaccatacctagcaaccaacacc 8130554  T

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Target: scaffold0034 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 105466 - 105380
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| ||||||    
T  105466 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacc 105380  T

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Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 6051120 - 6051206
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| ||||||    
T  6051120 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacc 6051206  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 47622700 - 47622614
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||| | ||||||| |||||||||| ||||||| ||||||||  |  |||||| ||||||||||||||||||||||||||    
T  47622700 ctcactatctctctccaccaagaagaacaactccggcccctatcctccaaacctccatccaccacaccatacctagccaccaacacc 47622614  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 35541604 - 35541637
Alignment:
Q  164 cccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||||||||||||||||| ||||||    
T  35541604 cccatcctccacaccatacctagccactaacacc 35541637  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 35541566 - 35541614
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctcca 159  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||    
T  35541566 ctcacgatctccctccaccacgaagaacaactccggcccccatcctcca 35541614  T

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Target: scaffold0472 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 3769 - 3855
Alignment:
Q  111 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 197  Q
    ||||||||||||| ||||||  | |||||||| ||||||||| ||||||  |  ||||||  |||||||||||||||||| ||||||    
T  3769 ctcactatctccctccaccacgacgaacaactccggcccccaacctccaaacctccatccgtcacaccatacctagccactaacacc 3855  T

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