View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_441 (Length: 212)

Name: NF6876A_low_441
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_441
NF6876A_low_441
[»] chr6 (10 HSPs)
chr6 (35-194)||(31564958-31565117)
chr6 (12-194)||(33414568-33414750)
chr6 (12-194)||(33269541-33269727)
chr6 (12-194)||(33258194-33258378)
chr6 (23-139)||(33384040-33384156)
chr6 (12-194)||(33395052-33395236)
chr6 (62-158)||(33278972-33279068)
chr6 (65-189)||(33280358-33280482)
chr6 (25-69)||(33293034-33293078)
chr6 (128-190)||(33293090-33293152)
[»] chr2 (1 HSPs)
chr2 (12-194)||(17447799-17447981)
[»] scaffold0428 (3 HSPs)
scaffold0428 (12-194)||(2315-2499)
scaffold0428 (62-158)||(15185-15281)
scaffold0428 (65-189)||(13771-13895)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 35 - 194
Target Start/End: Complemental strand, 31565117 - 31564958
Alignment:
Q  35 tgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgt 134  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  135 gaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatg 194  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565017 gaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatg 31564958  T

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Target: chr6; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 33414568 - 33414750
Alignment:
Q  12 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 111  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || | ||||||||||||||| |||||||||||    
T  33414568 gaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaat 33414667  T
Q  112 tagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatg 194  Q
    |||||||| |||  ||| |||||||||||||||| ||||||||||||||||  || |||||||||||||||| ||||||||||    
T  33414668 tagaacaccaatacgtgcatcgtgaatgtatgtaccgattcttccttcagctgctagtcttccggatttcttatcagcggatg 33414750  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 33269541 - 33269727
Alignment:
Q  12 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 111  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| || | |||||| |||||||| |||||||||||    
T  33269541 gaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaat 33269640  T
Q  112 tagaacactaatgtgtgaatcgtgaatg----tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatg 194  Q
    ||||||||  |||  || || |||||||    |||||| |||||||| |||||||  || ||||| | || ||||| ||||||||||    
T  33269641 tagaacaccgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagctgctagtcttgcagacttcttatcagcggatg 33269727  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 33258194 - 33258378
Alignment:
Q  12 gaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 110  Q
    |||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||    
T  33258194 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 33258293  T
Q  111 ttagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatg 194  Q
    ||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| ||||||||||    
T  33258294 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatg 33258378  T

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Target: chr6; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 33384040 - 33384156
Alignment:
Q  23 caagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaa 122  Q
    |||||||| ||||||||||||||||||| ||| |||||||| | |||||||||||| |||| |||||| |||| ||| |||||||||||||||||||  |    
T  33384040 caagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccga 33384139  T
Q  123 tgtgtgaatcgtgaatg 139  Q
    ||||||||| |||||||    
T  33384140 tgtgtgaatagtgaatg 33384156  T

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Target: chr6; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 33395052 - 33395236
Alignment:
Q  12 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttcta--ccgataaagtccgtttcacatttcacttca 109  Q
    |||||||||||||||||||   |||||||| |||||||  ||| |||||||||||| | ||||||||   || | |||||| |||||||| |||||||||    
T  33395052 gaacctgtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttca 33395151  T
Q  110 attagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatg 194  Q
    || ||||||   ||| ||| ||||| ||||||| || ||||||||||||||||  || | || ||||||||||||||||| ||||    
T  33395152 atcagaacatagatgcgtgcatcgtcaatgtatttaccgattcttccttcagctgctagcctaccggatttcttgtcagctgatg 33395236  T

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Target: chr6; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 33278972 - 33279068
Alignment:
Q  62 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttcctt 158  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctt 33279068  T

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Target: chr6; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 33280358 - 33280482
Alignment:
Q  65 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 164  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  33280358 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 33280457  T
Q  165 ctcgtcttccggatttcttgtcagc 189  Q
     |  |||||||||||||||||||||    
T  33280458 ttaatcttccggatttcttgtcagc 33280482  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 33293034 - 33293078
Alignment:
Q  25 agcagcaacttgcattgcaagatcatgaacaaactccttgaattt 69  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  33293034 agcagcaacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 33293090 - 33293152
Alignment:
Q  128 gaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcg 190  Q
    |||||||||||||||||| | ||||||||||||||  || |||||| ||||||||| ||||||    
T  33293090 gaatcgtgaatgtatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcg 33293152  T

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Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 17447981 - 17447799
Alignment:
Q  12 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 111  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| || | |||||| |||||| | |||| ||||||    
T  17447981 gaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaat 17447882  T
Q  112 tagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatg 194  Q
    |||| |||  ||| ||| |||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||    
T  17447881 tagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatg 17447799  T

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Target: scaffold0428 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 2315 - 2499
Alignment:
Q  12 gaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 110  Q
    |||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||    
T  2315 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 2414  T
Q  111 ttagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatg 194  Q
    ||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| ||||||||||    
T  2415 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatg 2499  T

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Target: scaffold0428; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 15281 - 15185
Alignment:
Q  62 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttcctt 158  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctt 15185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 65 - 189
Target Start/End: Complemental strand, 13895 - 13771
Alignment:
Q  65 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 164  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  13895 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 13796  T
Q  165 ctcgtcttccggatttcttgtcagc 189  Q
     |  |||||||||||||||||||||    
T  13795 ttaatcttccggatttcttgtcagc 13771  T

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