View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_444 (Length: 210)
Name: NF6876A_low_444
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_444 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 177041 - 177250
Alignment:
| Q |
1 |
tcaaaaaccttgaaacacaagtgggtcaaatggctcaacacatgtctcaagccaaccaacaaggaggagcgttcaccgccaacactcaagacaacccaaa |
100 |
Q |
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| T |
177041 |
tcaaaaaccttgaaacacaagtgggtcaaatggctcaacacatgtctcaagccaaccaacaaggaggagcgttcaccgccaacactcaagacaacccaaa |
177140 |
T |
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| Q |
101 |
agggaaagagcattgcaaagccataacaacaaggagtggtaaggtaattagtacgggggtaggaggtgacattgaagtggagcggaggggtgttgaaggg |
200 |
Q |
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| T |
177141 |
agggaaagagcattgcaaagccataacaacaaggagtggtaaggtaattagtacgggtgtaggaggtgacattgaagtggagcggagggttgttgaagag |
177240 |
T |
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| Q |
201 |
tttggtctcg |
210 |
Q |
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| T |
177241 |
tttgatctcg |
177250 |
T |
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Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 20170643 - 20170826
Alignment:
| Q |
9 |
cttgaaacacaagtgggtcaaatggctcaacacatgtctcaagccaaccaacaaggaggagcgttcaccgccaacactcaagacaacccaaaagggaaag |
108 |
Q |
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| T |
20170643 |
cttgagacacaaatgggtcaaatggatcaacaattagctcaagtcacccaacaaggaggagcgttcaccaccaacacacaagccaattcaaaag------ |
20170736 |
T |
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| Q |
109 |
agcattgcaaagccataacaacaaggagtggtaaggtaattagtacgggggtaggaggtgacattgaagtggagcggaggggtgttgaag |
198 |
Q |
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| T |
20170737 |
aacagtgcaaagccataacaacaaggagtggtaaggtaattggtaaaggtgtaggcgatgacattgaagtggagcagaaggttgttgaag |
20170826 |
T |
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