View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_45 (Length: 418)

Name: NF6876A_low_45
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_45
NF6876A_low_45
[»] chr4 (9 HSPs)
chr4 (10-406)||(11792859-11793258)
chr4 (10-150)||(11678539-11678679)
chr4 (10-150)||(11686818-11686958)
chr4 (10-157)||(11789552-11789699)
chr4 (10-157)||(11699724-11699871)
chr4 (236-403)||(26620759-26620930)
chr4 (10-91)||(11709177-11709258)
chr4 (236-367)||(26290146-26290278)
chr4 (236-367)||(55049836-55049968)
[»] scaffold0294 (1 HSPs)
scaffold0294 (25-185)||(20982-21145)
[»] chr6 (2 HSPs)
chr6 (236-377)||(20872275-20872417)
chr6 (236-373)||(9453015-9453153)
[»] chr7 (2 HSPs)
chr7 (262-403)||(26247556-26247695)
chr7 (219-291)||(29912365-29912438)
[»] chr8 (4 HSPs)
chr8 (236-367)||(30369890-30370022)
chr8 (236-367)||(37251313-37251445)
chr8 (224-377)||(23525018-23525172)
chr8 (265-390)||(16313374-16313499)
[»] chr5 (5 HSPs)
chr5 (236-367)||(4061950-4062082)
chr5 (236-377)||(7333074-7333216)
chr5 (236-390)||(29865999-29866154)
chr5 (236-367)||(8128581-8128713)
chr5 (248-317)||(9047410-9047483)
[»] scaffold0119 (1 HSPs)
scaffold0119 (236-377)||(40386-40528)
[»] chr1 (1 HSPs)
chr1 (236-367)||(17006641-17006773)
[»] chr3 (1 HSPs)
chr3 (224-390)||(19817530-19817697)
[»] scaffold0012 (1 HSPs)
scaffold0012 (236-365)||(31174-31304)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 406
Target Start/End: Original strand, 11792859 - 11793258
Alignment:
Q  10 agatggacatcaaacttggttttgtgacaatatcaataaggcacatcttgattacttttattggatacttgctggattaagtgtcatggggtttactttg 109  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11792859 agatggtcatgaaacttggttttgtgacaatatcaataaggcacatcttgattacttttattggatacttgctggattaagtgtcatggggtttactttg 11792958  T
Q  110 ttcatttactttgcaaaatcttacatttataatcacaaaggtatcatctcat---gatagacattgattagtttttgtaatatgtcatattttatacaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||     
T  11792959 ttcatttactttgcaaaatcttacatttataatcacaaaggtatcatctcataaggatagacattgattagtttttgtaatatgtcatattttatacaag 11793058  T
Q  207 tagtatagatatttgtaccaagcacatgttagaatttcgtgatacctaaaaattaagtaaagatgtggtatcattgtcatttgtctagttcctctctgtt 306  Q
    ||| ||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11793059 taggatagatatccgtaccaagcacatgttagaatttcgtgatacttaaaaattaagtaaagatgtggtatcattgtcatttgtctagttcctctctatt 11793158  T
Q  307 taatgggttgatccacacttgtgatggcttcctcataaggtctaacaatggtatcatagctcggttcgactttgaggggaagcatgattgattcatgatg 406  Q
    | ||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11793159 tcatgggttgatccacaccagtgatggctccctcataaggtctaacaatggtatcatagctcggttcgactttgaggggaagcatgattgattcatgatg 11793258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 11678539 - 11678679
Alignment:
Q  10 agatggacatcaaacttggttttgtgacaatatcaataaggcacatcttgattacttttattggatacttgctggattaagtgtcatggggtttactttg 109  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| | |||||||||||||||    
T  11678539 agatggacatgaaacttggttttgtgacaatatcaataaggcacattttgattacttttattggttgcttgctggattaagtttgatggggtttactttg 11678638  T
Q  110 ttcatttactttgcaaaatcttacatttataatcacaaagg 150  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  11678639 ttcgtttactttgcaaaatcttacatttataatcacaaagg 11678679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 11686818 - 11686958
Alignment:
Q  10 agatggacatcaaacttggttttgtgacaatatcaataaggcacatcttgattacttttattggatacttgctggattaagtgtcatggggtttactttg 109  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| | |||||||||||||||    
T  11686818 agatggacatgaaacttggttttgtgacaatatcaataaggcacattttgattacttttattggttgcttgctggattaagtttgatggggtttactttg 11686917  T
Q  110 ttcatttactttgcaaaatcttacatttataatcacaaagg 150  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  11686918 ttcgtttactttgcaaaatcttacatttataatcacaaagg 11686958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 11789552 - 11789699
Alignment:
Q  10 agatggacatcaaacttggttttgtgacaatatcaataaggcacatcttgattacttttattggatacttgctggattaagtgtcatggggtttactttg 109  Q
    |||||||||| | | ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||    
T  11789552 agatggacatgatagttggttttgtgacaatatcaataagacacatcttgattacttttattggctactttctggattaagtgtcattgggtttactttg 11789651  T
Q  110 ttcatttactttgcaaaatcttacatttataatcacaaaggtatcatc 157  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||    
T  11789652 ttcatttactttgcaaaatcttacatttataatcataaaggtgtcatc 11789699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 11699724 - 11699871
Alignment:
Q  10 agatggacatcaaacttggttttgtgacaatatcaataaggcacatcttgattacttttattggatacttgctggattaagtgtcatggggtttactttg 109  Q
    |||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  | ||||||||||||    
T  11699724 agatggtcatgaaagttggttttgtgacaatatcaataaggcacatcttgattacttttattggttacttgctggattaagtgtgttagggtttactttg 11699823  T
Q  110 ttcatttactttgcaaaatcttacatttataatcacaaaggtatcatc 157  Q
    ||  ||||||||||||||||||||||||||||||| ||| || |||||    
T  11699824 tttgtttactttgcaaaatcttacatttataatcataaaagtgtcatc 11699871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 236 - 403
Target Start/End: Original strand, 26620759 - 26620930
Alignment:
Q  236 tagaatttcgtgatacctaaaaattaagtaaagatgtggtatcattgtcatt----tgtctagttcctctctgtttaatgggttgatccacacttgtgat 331  Q
    |||||||||||||||| ||||||||||||||||||||   ||||||||||||    |||||||||||||| ||||||||||||||||| |||   ||| |    
T  26620759 tagaatttcgtgatacttaaaaattaagtaaagatgttaaatcattgtcattaatttgtctagttcctctatgtttaatgggttgatcaacaacagtgtt 26620858  T
Q  332 ggcttcctcataaggtctaacaatggtatcatagctcggttcgactttgaggggaagcatgattgattcatg 403  Q
    |||| | |||||||||  ||| |||| || |||||  ||||| |||||| |||| |||||||||||||||||    
T  26620859 ggctccttcataaggttcaacgatggcattatagcctggttcaactttgtggggtagcatgattgattcatg 26620930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 11709177 - 11709258
Alignment:
Q  10 agatggacatcaaacttggttttgtgacaatatcaataaggcacatcttgattacttttattggatacttgctggattaagt 91  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  11709177 agatggacatgaaacttggttttgtgacaatatcaataaggcacattttgattacttttattggttgcttgctggattaagt 11709258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 367
Target Start/End: Complemental strand, 26290278 - 26290146
Alignment:
Q  236 tagaatttcgtgatacctaaaa-attaagtaaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccacacttgtgatggc 334  Q
    |||||||||||||||  ||||| ||||||||||||| || ||||||| |||||||||| |||  |||||||  ||||| |  |||||  |  ||| ||||    
T  26290278 tagaatttcgtgatatttaaaatattaagtaaagatttgatatcattctcatttgtctggttgttctctgtgcaatggatcaatccatgccagtgttggc 26290179  T
Q  335 ttcctcataaggtctaacaatggtatcatagct 367  Q
    | |||| ||||| | ||||||||||||||||||    
T  26290178 tccctcgtaaggcccaacaatggtatcatagct 26290146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 367
Target Start/End: Original strand, 55049836 - 55049968
Alignment:
Q  236 tagaatttcgtgatacctaaaa-attaagtaaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccacacttgtgatggc 334  Q
    ||||||||| |||||  ||||| ||||||||||||| || ||||||| |||||||||| |||  |||||||  |||||||  |||||  |  ||| ||||    
T  55049836 tagaatttcatgatatttaaaatattaagtaaagatttgatatcattctcatttgtctggttgttctctgtgcaatgggtcaatccatgccagtgttggc 55049935  T
Q  335 ttcctcataaggtctaacaatggtatcatagct 367  Q
    | |||| ||||| | ||||||||||||||||||    
T  55049936 tccctcgtaaggcccaacaatggtatcatagct 55049968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 25 - 185
Target Start/End: Original strand, 20982 - 21145
Alignment:
Q  25 ttggttttgtgacaatatcaataaggcacatcttgattacttttattggatacttgctggattaagtgtcatggggtttactttgttcatttactttgca 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20982 ttggttttgtgacaatatcaataaggcacatcttgattacttttattggctacttgctggattaagtgtcatggggtttactttgtttatttactttgca 21081  T
Q  125 aaatcttacatttataatcacaaaggtatcatctc---atgatagacattgattagtttttgta 185  Q
    ||||||||||||||||| ||||||||||||||| |   | ||||| ||||||||||||||||||    
T  21082 aaatcttacatttataaccacaaaggtatcatcacacaaggatagtcattgattagtttttgta 21145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 377
Target Start/End: Original strand, 20872275 - 20872417
Alignment:
Q  236 tagaatttcgtgatacctaaaa-attaagtaaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccacacttgtgatggc 334  Q
    |||||||||||||||  ||||| |||||||||| || || ||||||| |||||||||| |||  ||| |||  |||||||| |||||  |  ||| ||||    
T  20872275 tagaatttcgtgatatttaaaatattaagtaaatatttgatatcattctcatttgtctggttgttctttgtgcaatgggttaatccatgccagtgttggc 20872374  T
Q  335 ttcctcataaggtctaacaatggtatcatagctcggttcgact 377  Q
    | |||| ||||| ||||||||||||||||||||| | ||||||    
T  20872375 tccctcgtaaggcctaacaatggtatcatagctcagatcgact 20872417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 373
Target Start/End: Complemental strand, 9453153 - 9453015
Alignment:
Q  236 tagaatttcgtgatacctaaaa-attaagtaaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccacacttgtgatggc 334  Q
    ||||||||| |||||| ||||| | ||||||||||| || |||| || |||||||| | ||| |||||| |  |||||||  || || ||  ||| ||||    
T  9453153 tagaatttcatgatacttaaaatactaagtaaagatttgatatcgttctcatttgtttggttgctctctatgcaatgggtcaatacataccagtgttggc 9453054  T
Q  335 ttcctcataaggtctaacaatggtatcatagctcggttc 373  Q
    |||||||||||| | ||| ||||| |||||| |||||||    
T  9453053 ttcctcataaggcccaacgatggtgtcatagttcggttc 9453015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 403
Target Start/End: Complemental strand, 26247695 - 26247556
Alignment:
Q  262 agtaaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccacacttgtgatggcttcctcataaggtctaacaatggtatc 361  Q
    |||||||||||| ||| |||||||||||| | ||| |||||| || |||  ||||||||||||  ||| ||||  |||||||||||||||| ||||||||    
T  26247695 agtaaagatgtgttattattgtcatttgtttggttgctctctattcaattagttgatccacaccagtgttggc-ccctcataaggtctaacgatggtatc 26247597  T
Q  362 atagctcggttcgactttgaggggaagcatgattgattcatg 403  Q
    || || | |||| |||||  ||  ||||||||||||||||||    
T  26247596 atggc-ctgttcaactttatggaaaagcatgattgattcatg 26247556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 29912365 - 29912438
Alignment:
Q  219 ttgtaccaagcacatgttagaatttcgtgatacctaaaa-attaagtaaagatgtggtatcattgtcatttgtc 291  Q
    |||| ||||||||  | |||||||||||||||  ||||| ||||||||||||| || ||||||| |||||||||    
T  29912365 ttgtgccaagcacgagctagaatttcgtgatatttaaaatattaagtaaagatttgatatcattctcatttgtc 29912438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 367
Target Start/End: Complemental strand, 30370022 - 30369890
Alignment:
Q  236 tagaatttcgtgatacctaaaa-attaagtaaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccacacttgtgatggc 334  Q
    |||||||||||||||  ||||| ||||||||||||| || ||||||| |||||||||| |||  |||||||  |||||||  |||||  |  ||| ||||    
T  30370022 tagaatttcgtgatatttaaaatattaagtaaagatttgatatcattctcatttgtctggttgttctctgtgcaatgggtcaatccatgccagtgttggc 30369923  T
Q  335 ttcctcataaggtctaacaatggtatcatagct 367  Q
    | |||| ||||| | ||||||||||||||||||    
T  30369922 tccctcgtaaggcccaacaatggtatcatagct 30369890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 367
Target Start/End: Complemental strand, 37251445 - 37251313
Alignment:
Q  236 tagaatttcgtgatacctaaaa-attaagtaaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccacacttgtgatggc 334  Q
    |||||||||||||||  ||||| ||||||||||||| || ||||||| |||||||||| |||  |||||||  |||||||  |||||  |  ||| ||||    
T  37251445 tagaatttcgtgatatttaaaatattaagtaaagatttgatatcattctcatttgtctggttgttctctgtgcaatgggtcaatccatgccagtgttggc 37251346  T
Q  335 ttcctcataaggtctaacaatggtatcatagct 367  Q
    | |||| ||||| | ||||||||||||||||||    
T  37251345 tccctcgtaaggcccaacaatggtatcatagct 37251313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 377
Target Start/End: Original strand, 23525018 - 23525172
Alignment:
Q  224 ccaagcacatgttagaatttcgtgatacctaaaa-attaagtaaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccac 322  Q
    ||||||||  |||||||||||||||||  ||||| ||||| ||||||| || ||||||| |||||||| | |||  |||||||  |||||||  |||||     
T  23525018 ccaagcacgggttagaatttcgtgatatttaaaatattaattaaagatttgatatcattttcatttgtttggttgttctctgtgcaatgggtcaatccat 23525117  T
Q  323 acttgtgatggcttcctcataaggtctaacaatggtatcatagctcggttcgact 377  Q
     || ||| |||||  ||| ||||| | ||||| ||||||||||||| | ||||||    
T  23525118 gctagtgttggctctctcgtaaggcccaacaacggtatcatagctcagatcgact 23525172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 390
Target Start/End: Complemental strand, 16313499 - 16313374
Alignment:
Q  265 aaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccacacttgtgatggcttcctcataaggtctaacaatggtatcata 364  Q
    |||||| || ||||||| ||||||||||||||  |||||||  |||||||  |||||  |  ||| ||||| |||| ||||| | ||||||| |||||||    
T  16313499 aaagatttgatatcattatcatttgtctagttgttctctgtgcaatgggtcaatccatgccagtgttggctccctcgtaaggcccaacaatgatatcata 16313400  T
Q  365 gctcggttcgactttgaggggaagca 390  Q
    |||| | |||||| || || ||||||    
T  16313399 gctcagatcgactctgtggagaagca 16313374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 367
Target Start/End: Original strand, 4061950 - 4062082
Alignment:
Q  236 tagaatttcgtgatacctaaaa-attaagtaaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccacacttgtgatggc 334  Q
    |||||||||||||||  ||||| ||||||||||||| || ||||||| |||||||||| |||  |||||||  |||||||  |||||  |  ||| ||||    
T  4061950 tagaatttcgtgatatttaaaatattaagtaaagatttgatatcattctcatttgtctggttgttctctgtgcaatgggtcaatccatgccagtgttggc 4062049  T
Q  335 ttcctcataaggtctaacaatggtatcatagct 367  Q
    | |||| ||||| | ||||||||||||||||||    
T  4062050 tccctcgtaaggcccaacaatggtatcatagct 4062082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 377
Target Start/End: Complemental strand, 7333216 - 7333074
Alignment:
Q  236 tagaatttcgtgatacctaaaa-attaagtaaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccacacttgtgatggc 334  Q
    |||||||||||||||  ||||| ||||||||||||| || ||||||| |||||||||| |||  |||||||  |||||||  |||||  |  ||| ||||    
T  7333216 tagaatttcgtgatatttaaaatattaagtaaagatttgatatcattctcatttgtctggttgttctctgtgcaatgggtcaatccatgccagtgttggc 7333117  T
Q  335 ttcctcataaggtctaacaatggtatcatagctcggttcgact 377  Q
    | |||| ||||| | ||||||||||| ||||||| | ||||||    
T  7333116 tccctcgtaaggcccaacaatggtattatagctcagatcgact 7333074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 390
Target Start/End: Complemental strand, 29866154 - 29865999
Alignment:
Q  236 tagaatttcgtgatacctaaaa-attaagtaaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccacacttgtgatggc 334  Q
    |||||||||||||||  ||||| ||||| ||||||| || ||||||| |||||||||| |||  ||| |||  |||||||  |||||  |  ||| ||||    
T  29866154 tagaatttcgtgatatttaaaatattaattaaagatttgatatcattttcatttgtctggttgttctttgtgcaatgggtcaatccatgccagtgttggc 29866055  T
Q  335 ttcctcataaggtctaacaatggtatcatagctcggttcgactttgaggggaagca 390  Q
    | |||| ||||| | ||||||||||||||||||| | |||||| || || ||||||    
T  29866054 tccctcgtaaggcccaacaatggtatcatagctcagatcgactctgtggagaagca 29865999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 367
Target Start/End: Complemental strand, 8128713 - 8128581
Alignment:
Q  236 tagaatttcgtgatacctaaaa-attaagtaaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccacacttgtgatggc 334  Q
    |||||||||||||||  ||||| ||||||||||||| || ||||||| |||||||||| |||  |||||||  |||||||  ||| |  || ||| ||||    
T  8128713 tagaatttcgtgatatttaaaatattaagtaaagatttgatatcattctcatttgtctggttgttctctgtgcaatgggtcaatcaatgctagtgttggc 8128614  T
Q  335 ttcctcataaggtctaacaatggtatcatagct 367  Q
    |  ||| ||||  | ||||||||||||||||||    
T  8128613 tcactcgtaagacccaacaatggtatcatagct 8128581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 9047410 - 9047483
Alignment:
Q  248 atacctaaaaattaagtaaagatgtggtatcattgtc----atttgtctagttcctctctgtttaatgggttga 317  Q
    |||| |||||||| |||||||| || |||||||||||    |||||| |||||||||||| |||||| ||||||    
T  9047410 atacttaaaaattgagtaaagacgttgtatcattgtcattaatttgtttagttcctctctatttaattggttga 9047483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 377
Target Start/End: Original strand, 40386 - 40528
Alignment:
Q  236 tagaatttcgtgatacctaaaa-attaagtaaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccacacttgtgatggc 334  Q
    |||||||||||||||  ||||| ||||||||||||| || ||||||| | |||||||| |||  |||||||  |||||||  |||||  |  ||| ||||    
T  40386 tagaatttcgtgatatttaaaatattaagtaaagatttgatatcattcttatttgtctggttgttctctgtgcaatgggtcaatccatgccagtgttggc 40485  T
Q  335 ttcctcataaggtctaacaatggtatcatagctcggttcgact 377  Q
    | |||| ||||| ||||||||| ||||||||||| | ||||||    
T  40486 tccctcgtaaggcctaacaatgatatcatagctcagatcgact 40528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 367
Target Start/End: Complemental strand, 17006773 - 17006641
Alignment:
Q  236 tagaatttcgtgatacctaaaa-attaagtaaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccacacttgtgatggc 334  Q
    |||||||||||||||  ||||| ||||||||||||| || ||||||| |||||||||| |||  ||||| |  |||||||  |||||     ||| ||||    
T  17006773 tagaatttcgtgatatttaaaatattaagtaaagatttgatatcattctcatttgtctggttgttctctctgcaatgggtcaatccatgtcagtgttggc 17006674  T
Q  335 ttcctcataaggtctaacaatggtatcatagct 367  Q
    | |||| ||||| | ||||||||||||||||||    
T  17006673 tccctcgtaaggcccaacaatggtatcatagct 17006641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 390
Target Start/End: Complemental strand, 19817697 - 19817530
Alignment:
Q  224 ccaagcacatgttagaatttcgtgatacctaaaa-attaagtaaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccac 322  Q
    ||||||||  ||||||||||||||||   ||||| ||||| ||||||| || ||||||| |||||||||| |||  |||||||  |||||||| ||| |     
T  19817697 ccaagcacgggttagaatttcgtgatgtttaaaatattaattaaagatttgatatcattttcatttgtctggttgttctctgtgcaatgggttaatctat 19817598  T
Q  323 acttgtgatggcttcctcataaggtctaacaatggtatcatagctcggttcgactttgaggggaagca 390  Q
     |  ||| ||||| |||| || |  | ||||||||||||||||||| | |||||| || || ||||||    
T  19817597 gccagtgttggctccctcgtacgacccaacaatggtatcatagctcagatcgactctgtggagaagca 19817530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 365
Target Start/End: Complemental strand, 31304 - 31174
Alignment:
Q  236 tagaatttcgtgatacctaaaa-attaagtaaagatgtggtatcattgtcatttgtctagttcctctctgtttaatgggttgatccacacttgtgatggc 334  Q
    |||||||||||||||  ||||| ||||| ||||||| || ||||||| |||||||||| | |  |||||||  |||||||  |||||  |  ||| ||||    
T  31304 tagaatttcgtgatatttaaaatattaattaaagatttgatatcattttcatttgtctggatgttctctgtgcaatgggtcaatccatgccagtgttggc 31205  T
Q  335 ttcctcataaggtctaacaatggtatcatag 365  Q
    | |||||||||| | || |||||||||||||    
T  31204 tccctcataaggcccaagaatggtatcatag 31174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University