View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_458 (Length: 203)
Name: NF6876A_low_458
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_458 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 188
Target Start/End: Complemental strand, 3067498 - 3067320
Alignment:
| Q |
10 |
tatatgcatataaagccttttattgaagtacaatgtattctagcttgtatggaagactgcatgtattattatttgtttatattctggcacattgatattt |
109 |
Q |
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| T |
3067498 |
tatacgcatctaaagccttttattgaagtacaatgtattatagcttgtatggaagactgcatgtattattatttgtttatattctggcacattgatattt |
3067399 |
T |
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| Q |
110 |
gatatatccttgatgttcaatttcacatgttatcaacaacttgactatataaataattaatagttatttattctctaat |
188 |
Q |
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| T |
3067398 |
gatatatccttgatgttcaatttcacatgttatcaacaacttgactatataaataattaatagttatttattctctaat |
3067320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 3052679 - 3052618
Alignment:
| Q |
125 |
ttcaatttcacatgttatcaacaacttgactatataaataattaatagttatttattctctaat |
188 |
Q |
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| T |
3052679 |
ttcaatttcatatgatatcaacaacttgactatataaata--gaatagttatttattctctaat |
3052618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 6769824 - 6769879
Alignment:
| Q |
130 |
tttcacatgttatcaacaacttgactatataaataattaatagttatttattctctaa |
187 |
Q |
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| T |
6769824 |
tttcatatgttatcaacaacttcactctata--taattaatagttatttattctctaa |
6769879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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