View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_459 (Length: 202)

Name: NF6876A_low_459
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_459
NF6876A_low_459
[»] chr1 (3 HSPs)
chr1 (114-197)||(36848319-36848403)
chr1 (124-192)||(2900966-2901034)
chr1 (138-193)||(28539038-28539093)
[»] chr5 (3 HSPs)
chr5 (124-193)||(15022691-15022760)
chr5 (124-193)||(15005191-15005260)
chr5 (148-193)||(13501976-13502021)
[»] chr3 (1 HSPs)
chr3 (139-193)||(9021301-9021355)
[»] chr2 (4 HSPs)
chr2 (132-193)||(3573224-3573285)
chr2 (148-193)||(19569988-19570033)
chr2 (139-193)||(24579144-24579198)
chr2 (19-47)||(19569858-19569886)
[»] chr4 (1 HSPs)
chr4 (132-188)||(6136492-6136548)
[»] chr6 (1 HSPs)
chr6 (132-189)||(20725942-20725999)
[»] chr8 (2 HSPs)
chr8 (19-47)||(19437080-19437108)
chr8 (19-47)||(19573229-19573257)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 36848403 - 36848319
Alignment:
Q  114 ttaatatttat-attcttgacacttcatatcatacttttaattttagtgtcttaattagattattcacttgcttttcactcctga 197  Q
    ||||||||||| |||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36848403 ttaatatttattattcttaacacttcttatcattcttttaattttagtgtcttaattagattattcacttgcttttcactcctga 36848319  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 2900966 - 2901034
Alignment:
Q  124 tattcttgacacttcatatcatacttttaattttagtgtcttaattagattattcacttgcttttcact 192  Q
    ||||||| ||||| ||||||||  ||||||||||||| ||| ||||| |||||||||||| ||||||||    
T  2900966 tattcttaacactccatatcattattttaattttagtatctcaattaaattattcacttgtttttcact 2901034  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 28539038 - 28539093
Alignment:
Q  138 catatcatacttttaattttagtgtcttaattagattattcacttgcttttcactc 193  Q
    ||||||||  |||||||||||||| || |||| |||||||||||||||||||||||    
T  28539038 catatcattattttaattttagtgcctcaatttgattattcacttgcttttcactc 28539093  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 15022760 - 15022691
Alignment:
Q  124 tattcttgacacttcatatcatacttttaattttagtgtcttaattagattattcacttgcttttcactc 193  Q
    ||||||| ||||| ||||||||  ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  15022760 tattcttaacactccatatcattattttaattttagtgtctcaattagattattcacttgcttttaactc 15022691  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 15005260 - 15005191
Alignment:
Q  124 tattcttgacacttcatatcatacttttaattttagtgtcttaattagattattcacttgcttttcactc 193  Q
    ||||||| ||| ||||||||||  |||||||||||| |||| |||||||||||||||||| |||| ||||    
T  15005260 tattcttaacatttcatatcattattttaattttagcgtctcaattagattattcacttgattttaactc 15005191  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 13502021 - 13501976
Alignment:
Q  148 ttttaattttagtgtcttaattagattattcacttgcttttcactc 193  Q
    ||||||||| ||||||| ||| |||||||||||||||| |||||||    
T  13502021 ttttaatttcagtgtctcaataagattattcacttgctgttcactc 13501976  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 9021355 - 9021301
Alignment:
Q  139 atatcatacttttaattttagtgtcttaattagattattcacttgcttttcactc 193  Q
    |||||||  |||||||| ||||| || ||||||||||||||||||||||||||||    
T  9021355 atatcattattttaattgtagtgcctcaattagattattcacttgcttttcactc 9021301  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 3573224 - 3573285
Alignment:
Q  132 acacttcatatcatacttttaattttagtgtcttaattagattattcacttgcttttcactc 193  Q
    ||||| ||||||||  ||||||||||| || || |||||||||||||||||| |||||||||    
T  3573224 acactccatatcattgttttaattttattgcctgaattagattattcacttgtttttcactc 3573285  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 19569988 - 19570033
Alignment:
Q  148 ttttaattttagtgtcttaattagattattcacttgcttttcactc 193  Q
    |||||||||||||| || ||||||||||||||||| ||||||||||    
T  19569988 ttttaattttagtgcctcaattagattattcactttcttttcactc 19570033  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 24579144 - 24579198
Alignment:
Q  139 atatcatacttttaattttagtgtcttaattagattattcacttgcttttcactc 193  Q
    |||||||  |||||||||||||| || |||||||| ||||| |||||||||||||    
T  24579144 atatcattattttaattttagtgcctcaattagataattcatttgcttttcactc 24579198  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 19569858 - 19569886
Alignment:
Q  19 agagaggttagtcatagagaataagaatt 47  Q
    |||||||||||||||||||||||||||||    
T  19569858 agagaggttagtcatagagaataagaatt 19569886  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 6136492 - 6136548
Alignment:
Q  132 acacttcatatcatacttttaattttagtgtcttaattagattattcacttgctttt 188  Q
    ||||| ||||||||  |||||||||||||| || |||||||||||||||||| ||||    
T  6136492 acactccatatcattattttaattttagtgcctcaattagattattcacttgttttt 6136548  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 20725999 - 20725942
Alignment:
Q  132 acacttcatatcatacttttaattttagtgtcttaattagattattcacttgcttttc 189  Q
    ||||| ||||||||  ||||||||||| || || |||||||||||||| |||||||||    
T  20725999 acactccatatcattattttaattttattgcctcaattagattattcatttgcttttc 20725942  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 19437080 - 19437108
Alignment:
Q  19 agagaggttagtcatagagaataagaatt 47  Q
    |||||||||||||||||||||||||||||    
T  19437080 agagaggttagtcatagagaataagaatt 19437108  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 19573229 - 19573257
Alignment:
Q  19 agagaggttagtcatagagaataagaatt 47  Q
    |||||||||||||||||||||||||||||    
T  19573229 agagaggttagtcatagagaataagaatt 19573257  T

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