View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_46 (Length: 417)
Name: NF6876A_low_46
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_46 |
 | |
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| [»] chr3 (4 HSPs) |
| |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
| | |
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| [»] scaffold0108 (1 HSPs) |
| | |
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| [»] scaffold0064 (1 HSPs) |
| | |
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| [»] scaffold0897 (1 HSPs) |
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| [»] scaffold0319 (2 HSPs) |
| | |
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| [»] scaffold0040 (1 HSPs) |
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| [»] scaffold0304 (2 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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| [»] scaffold0107 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 13 - 417
Target Start/End: Complemental strand, 10787425 - 10787023
Alignment:
| Q |
13 |
atggacatcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatgga |
112 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10787425 |
atggacatcacatgttctgcattctgaggtgtacccagttcatgctagaccctgagccctgcattcctaccgtccaaggcttgttgcagaatgctatgga |
10787326 |
T |
|
| Q |
113 |
tgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctctt |
212 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10787325 |
cgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctctt |
10787226 |
T |
|
| Q |
213 |
ttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10787225 |
ttggagacaaaaaacgttgcgcgctatcgcagagagataacaggc--ggggacacccgtttccgcttcgtttcaggctggtacaaaagattactgcctcc |
10787128 |
T |
|
| Q |
313 |
tcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10787127 |
tcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaa |
10787028 |
T |
|
| Q |
413 |
tatga |
417 |
Q |
| |
|
||||| |
|
|
| T |
10787027 |
tatga |
10787023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 417
Target Start/End: Original strand, 14688368 - 14688770
Alignment:
| Q |
13 |
atggacatcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatgga |
112 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
14688368 |
atggacatcacatgttctgcattttgaggtgcacccagttcatgctggaccctgagccctgcatccctaccatccaaggtttgttgaagaatgccatgga |
14688467 |
T |
|
| Q |
113 |
tgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctctt |
212 |
Q |
| |
|
||| |||||||||||||||||||| ||||| || ||||||||||||||| ||||| ||| || |||| |||||| ||||||||||||||| ||||||||| |
|
|
| T |
14688468 |
tgctggctctgtgaccgccctgtatttcgacgtgctgctgagggcgcttgacggtatcacacctgataccgctacactttttcatgatttttggtctctt |
14688567 |
T |
|
| Q |
213 |
ttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcc |
312 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14688568 |
ttggagacaagaaacgtcgcgcgctatcgcagagatataacgggc--ggggacacccgtttccgcttcgtttcaggctggtacaaaagattactgcctcc |
14688665 |
T |
|
| Q |
313 |
tcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaa |
412 |
Q |
| |
|
|| |||||| || |||||||| || || |||||||||||||| | |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
14688666 |
tcggttggtccgtcgtcgattctgcaacaactggcacaactggcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggatgagcaa |
14688765 |
T |
|
| Q |
413 |
tatga |
417 |
Q |
| |
|
||||| |
|
|
| T |
14688766 |
tatga |
14688770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 417
Target Start/End: Original strand, 7360370 - 7360772
Alignment:
| Q |
13 |
atggacatcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatgga |
112 |
Q |
| |
|
||||||| |||||||| |||||| ||||||||||||| ||||||||||| |||||||||||| | |||||||||||||| || ||| ||||||| ||||| |
|
|
| T |
7360370 |
atggacaccacatgttctgcattttgaggtgtacccagttcatgctggatcctgagccctgcgtccctaccatccaaggtttcttgaagaatgccatgga |
7360469 |
T |
|
| Q |
113 |
tgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctctt |
212 |
Q |
| |
|
||| |||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| || |||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
7360470 |
tgctggctctgtgaccgctctgtacttcgacgtactgctgagggcgcttgacggtgtcacacctgatgccgctgcactttttcatgatttcttgtctctt |
7360569 |
T |
|
| Q |
213 |
ttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcc |
312 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||| ||||||||| | ||||||| |||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
7360570 |
ttggagacacgaaacgtcgcgcgctatcgtagagacataacaggc--gtggacacctctttccgtttcgtttcaggctggtataaaagattactgcctcc |
7360667 |
T |
|
| Q |
313 |
tcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaa |
412 |
Q |
| |
|
|| |||| | || |||||||| || || |||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
7360668 |
tcggttgatccgtcgtcgattctgcaacaactggcacaactgtcgcggggatgtattgagacgtaactatcgaggctatcaccctgctgaggatgagcaa |
7360767 |
T |
|
| Q |
413 |
tatga |
417 |
Q |
| |
|
||||| |
|
|
| T |
7360768 |
tatga |
7360772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 100 - 408
Target Start/End: Complemental strand, 10158119 - 10157805
Alignment:
| Q |
100 |
agaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatga |
199 |
Q |
| |
|
||||||||||||||| ||||| |||| ||| || ||||| |||||| || ||||||||||| ||||| || | |||| || |||||| |||| |
|
|
| T |
10158119 |
agaatgctatggatgatggctccgtgagcgcgctttactttgatgtaatgttgagggcgcttgacggtatctctcctgatataactgaacttttcaatga |
10158020 |
T |
|
| Q |
200 |
tttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaa |
299 |
Q |
| |
|
|| ||||||||||||||||| || || |||||||| |||||||| |||||||| | | |||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
10158019 |
cttttggtctcttttggagacgaagaatgttgcgcgttatcgcagggagataac--gggaggggactcccactttcgcttcgtttcaggctggtacaaaa |
10157922 |
T |
|
| Q |
300 |
gattcctg--------cctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttat |
391 |
Q |
| |
|
| || ||| || || |||||| |||| |||||||| || || |||||||||||||| | || |||| || || || ||||||||||| | | |
|
|
| T |
10157921 |
ggttgctgcccccccccccccccagttgattcgtcgtcgattctgcaacaactggcacaactgccctggatatgggttaaggcgcaactatcgaggattt |
10157822 |
T |
|
| Q |
392 |
caccctgctgaggacga |
408 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
10157821 |
catcctgctgaggacga |
10157805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 417
Target Start/End: Complemental strand, 1730243 - 1729841
Alignment:
| Q |
13 |
atggacatcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatgga |
112 |
Q |
| |
|
|||||||||| ||||| |||||| |||||||||| || ||||||||| ||||||||||||| ||||||||| ||||||| ||| || ||||||||||||| |
|
|
| T |
1730243 |
atggacatcatatgttctgcattttgaggtgtactcagttcatgctgtaccctgagccctgtattcctaccgtccaaggtttgctgaagaatgctatgga |
1730144 |
T |
|
| Q |
113 |
tgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctctt |
212 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1730143 |
cgctggctctgtgaccgccctgtacttcgatgtactgctgagggtgcttaacgatgtcagacttgattccgctagactttttcatgatttctggtctctt |
1730044 |
T |
|
| Q |
213 |
ttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcc |
312 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
1730043 |
ttggagacaagaaacgtcgcgcgctatcgcagagagataacaggc--ggggacacccgtttccgcttcgtttcaggctggtataagagattactgcctcc |
1729946 |
T |
|
| Q |
313 |
tcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaa |
412 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
1729945 |
tcagttggtccgccgtcgattttgcaataactggcacaactgtcacggggatggattgagacgcaactatcgaggttatcgccttgctgaggacgagcaa |
1729846 |
T |
|
| Q |
413 |
tatga |
417 |
Q |
| |
|
||||| |
|
|
| T |
1729845 |
tatga |
1729841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 22338584 - 22338640
Alignment:
| Q |
101 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggc |
157 |
Q |
| |
|
||||||||||||||| |||||||||| ||| || ||||| ||||| |||||||||| |
|
|
| T |
22338584 |
gaatgctatggatgctggctctgtgagcgcgctctactttgatgtcatgctgagggc |
22338640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 417
Target Start/End: Original strand, 14328899 - 14329301
Alignment:
| Q |
13 |
atggacatcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatgga |
112 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||| |||| ||| || ||||||| ||||| |
|
|
| T |
14328899 |
atggacatcacatgttctgcattttgaggtgtacccagttcatgctggaccctgagccctgcatccctaccatctaaggtttgctgaagaatgccatgga |
14328998 |
T |
|
| Q |
113 |
tgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctctt |
212 |
Q |
| |
|
||| |||||||||||||| ||||||||||| |||||||||||||||||| ||||| ||| || |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
14328999 |
tgctggctctgtgaccgctctgtacttcgacgtactgctgagggcgcttgacggtatcacacctgatgccgctacactttttcatgatttctggtctctt |
14329098 |
T |
|
| Q |
213 |
ttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcc |
312 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| ||||| | | | ||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
14329099 |
ttggagacacgaaacgtcgcgcgctatcgcagagacataac--gggtgtggacacccgtttccgcttcgtttcaggctggtataaaagattactgcctcc |
14329196 |
T |
|
| Q |
313 |
tcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaa |
412 |
Q |
| |
|
|| |||| || | |||||||| || || |||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
14329197 |
tcggttgatttgtcgtcgattctgcaacaactggcacaactgtcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggatgagcaa |
14329296 |
T |
|
| Q |
413 |
tatga |
417 |
Q |
| |
|
||||| |
|
|
| T |
14329297 |
tatga |
14329301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 23 - 402
Target Start/End: Original strand, 18166544 - 18166922
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctct |
122 |
Q |
| |
|
||||||||||||| |||| || || |||||||||||||| |||||| |||||||||||| || | | ||| | ||| ||||||||||| || ||| |
|
|
| T |
18166544 |
catgttttgcattttgagatgcactcaattcatgctggatgttgagccatgcattcctaccgtcaagcgtttgcttaggaacgctatggatgctggttct |
18166643 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||||||| || ||||| |||||| ||||||| |||||| ||||| ||| | |||| ||||| ||| || |||| || ||||||||||||||||||| |
|
|
| T |
18166644 |
gtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaactcttcaatgacttttggtctcttttggagacaa |
18166743 |
T |
|
| Q |
223 |
aaaac-gttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcctcagttggt |
321 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||| |||| || ||| |||||||||||| |||||||||||||| | || |||||||| ||||| | |
|
|
| T |
18166744 |
aaaaatgttgcgcgttatcgcagggagataacaggagggg--actcccatttccgcttcgtctcaggctggtacaagcggttgctgcctccccagttaat |
18166841 |
T |
|
| Q |
322 |
tcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctga |
402 |
Q |
| |
|
| | |||||||| || || ||||||||||| |||| || |||||| | || |||||||||||||| | ||| |||||||| |
|
|
| T |
18166842 |
ttgtcgtcgattctgcaacaactggcacaattgtcgtggagatggactaaggcgtaactatcgagggtttcatcctgctga |
18166922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 417
Target Start/End: Complemental strand, 24954977 - 24954584
Alignment:
| Q |
13 |
atggacatcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatgga |
112 |
Q |
| |
|
||||||| |||||||| |||||| ||||||||||||| |||||| ||||||||||||| ||||| |||||||||||||||||| || ||||||| ||||| |
|
|
| T |
24954977 |
atggacaacacatgttctgcattttgaggtgtacccagttcatgttggaccctgagccttgcatccctaccatccaaggcttgctgaagaatgccatgga |
24954878 |
T |
|
| Q |
113 |
tgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctctt |
212 |
Q |
| |
|
||| |||||||||||||| ||||||||||| |||||||||||||||||| ||||| ||| || |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
24954877 |
tgctggctctgtgaccgctctgtacttcgacgtactgctgagggcgcttgacggtatcacacctgatgccgctacactttttcatgatttctggtctctt |
24954778 |
T |
|
| Q |
213 |
ttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcc |
312 |
Q |
| |
|
|||||||| |||||| ||||| ||||| |||| ||||||||| | ||||||| ||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
24954777 |
ctggagacacgaaacgtcgcgcgatatcgtcgagacataacaggc--gtggacacctgtttccgcttcgtttcaggctggtataaaagattactgcctcc |
24954680 |
T |
|
| Q |
313 |
tcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaa |
412 |
Q |
| |
|
|| ||| | || |||||||| ||| ||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
24954679 |
tcgattgatccgtcgtcgatt---------ctgcaacaactgtcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggataagcaa |
24954589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 23 - 402
Target Start/End: Original strand, 23621371 - 23621749
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctct |
122 |
Q |
| |
|
||||||||| ||| |||| || || ||||||||||| || |||||| |||||||||||| | || | ||| | ||||||||||||||| || ||| |
|
|
| T |
23621371 |
catgttttgtattttgagatgcactcaattcatgctagatattgagccatgcattcctaccgttaaacgtttgcttaggaatgctatggatgctggttct |
23621470 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||||||| || ||||| |||||| ||||||| |||||| ||||| ||| | ||| ||||| ||| || ||| || ||||||||||||||||||| |
|
|
| T |
23621471 |
gtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgacaccgctgaactcttcattgacttttggtctcttttggagacaa |
23621570 |
T |
|
| Q |
223 |
aaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctg-cctcctcagttggt |
321 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||| | |||||| ||| |||||||||||||||| |||||||||| || || ||| || || ||||| | |
|
|
| T |
23621571 |
aaaatgttgcgcgttatcgcagggagataacag--gaggggactcccatttccgcttcgtttcatgctggtacaagaggttgctgccccccccagttaat |
23621668 |
T |
|
| Q |
322 |
tcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctga |
402 |
Q |
| |
|
||| |||||||| || || |||||||||||||||| || |||||||| || || ||||||| ||| | ||| |||||||| |
|
|
| T |
23621669 |
tcgtcgtcgattctgcaacaactggcacaactgtcgtggagatggattaaggcgcaactatctagggtttcatcctgctga |
23621749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 402
Target Start/End: Original strand, 23195767 - 23196144
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctct |
122 |
Q |
| |
|
||||||||||||| |||| || || ||||||||||||||| |||||| |||||||||||| || | | ||| | ||| |||||||||| || ||| |
|
|
| T |
23195767 |
catgttttgcattttgagatgcactcaattcatgctggacgttgagccatgcattcctaccgtcaagtgtttgcttaggaacactatggatgctggttct |
23195866 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||||||| || ||||| |||||| ||||||| |||||| ||||| ||| | |||| ||||| ||| || |||| || ||||||||||||||||||| |
|
|
| T |
23195867 |
gtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaactcttcaatgacttttggtctcttttggagacaa |
23195966 |
T |
|
| Q |
223 |
aaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcctcagttggtt |
322 |
Q |
| |
|
|||| |||||||| |||||||| ||||||| || | |||||| ||| ||||||||| || |||||||||| || || || ||||||| || || || |
|
|
| T |
23195967 |
aaaatgttgcgcgttatcgcagggagataatag--gaggggactcccatttccgctttgtctcaggctggtttaagaggttgttgcctccccaattaatt |
23196064 |
T |
|
| Q |
323 |
cgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctga |
402 |
Q |
| |
|
|| |||||||| || || |||||||||||||||| || |||||| | || || ||||||||||| | ||| |||||||| |
|
|
| T |
23196065 |
cgtcgtcgattctgcaacaactggcacaactgtcgtggagatggactaaggcgcaactatcgagggtttcatcctgctga |
23196144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 402
Target Start/End: Complemental strand, 22643584 - 22643208
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctct |
122 |
Q |
| |
|
||||||||||||| |||| || || |||||||||||||| |||||| |||||||||| || | | ||| | ||| || |||||||| || ||| |
|
|
| T |
22643584 |
catgttttgcattttgagatgcactcaattcatgctggatgttgagccatgcattcctattgtcaagcgtttgcttaggaacgccatggatgctggttct |
22643485 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||||||| || ||||| |||||| ||||||| |||||| ||||| ||| ||||| ||||| ||| || |||| || ||||||||||||||||||| |
|
|
| T |
22643484 |
gtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcatt-ttgataccgctgaactcttcaatgacttttggtctcttttggagacaa |
22643386 |
T |
|
| Q |
223 |
aaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcctcagttggtt |
322 |
Q |
| |
|
|||| ||||||| |||||||| |||| ||||| | ||||| ||| ||||| |||||| | |||||||||||| || || || ||||| |||| || |
|
|
| T |
22643385 |
aaaatgttgcgcattatcgcagggagacaacag--gaggggagtcccatttccacttcgtcttaggctggtacaagaggttgcttcctcccaagttaatt |
22643288 |
T |
|
| Q |
323 |
cgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctga |
402 |
Q |
| |
|
|| |||||||| || || |||| ||||||||||| || |||||| | || || ||||||||||| | ||| |||||||| |
|
|
| T |
22643287 |
cgtcgtcgattctgcaacaactagcacaactgtcttggagatggactaaggcgcaactatcgagggtttcatcctgctga |
22643208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 13 - 417
Target Start/End: Complemental strand, 22081242 - 22080839
Alignment:
| Q |
13 |
atggacatcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatgga |
112 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||||||||||| ||| |||| |||||| |||||||||||| || |||| || | |||| || ||||| |
|
|
| T |
22081242 |
atggacatcatatgttttgcattttgagatgtacccaatttatgttggatattgagccatgcattcctaccgtcaaaggttttcttaagaacgccatgga |
22081143 |
T |
|
| Q |
113 |
tgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctctt |
212 |
Q |
| |
|
||| || ||||||||||| || |||||||| |||||||||||||||||| | ||| ||| || |||| | ||| ||| ||||||||||||||||||||| |
|
|
| T |
22081142 |
tgctggttctgtgaccgctctctacttcgacgtactgctgagggcgcttgatggtatcacacctgatactgctgaactctttcatgatttctggtctctt |
22081043 |
T |
|
| Q |
213 |
ttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttca-ggctggtacaaaagattcctgcctc |
311 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||||| | | ||||||||||| ||||| ||||||| |
|
|
| T |
22081042 |
ttggagacaagaaacgtcgcgcgctatcgcagggagataacaggc--ggggatacccgtttccgcttcgtctaatggctggtacaagagattactgcctc |
22080945 |
T |
|
| Q |
312 |
ctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagca |
411 |
Q |
| |
|
| ||||| | || |||||||| || || |||||||||||||||| ||||||||||||||| || ||||||||||| ||||| |||||||| || || || |
|
|
| T |
22080944 |
cccagttaatccgtcgtcgattctgcaacaactggcacaactgtcgcggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaaca |
22080845 |
T |
|
| Q |
412 |
atatga |
417 |
Q |
| |
|
|||||| |
|
|
| T |
22080844 |
atatga |
22080839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 224 - 417
Target Start/End: Original strand, 41375532 - 41375723
Alignment:
| Q |
224 |
aaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcctcagttggttc |
323 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
41375532 |
aaacgtcgcgcgctatcgcagagagataacaggcgggg--acacccgtttccgcttcgtttcaggctggtacaagagattactgcctccttagttggttc |
41375629 |
T |
|
| Q |
324 |
gccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatga |
417 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41375630 |
gccgtcgattttgcaataactggtacaactgtcacggggatggattgagacgcaactatcgaggttatcaccctgctgaggacgagcaatatga |
41375723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 41375346 - 41375532
Alignment:
| Q |
13 |
atggacatcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatgga |
112 |
Q |
| |
|
|||||||||| ||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
41375346 |
atggacatcatatgttctgcattttgaggtgtacccagttcatgctggaccctgagccctgcattcctaccgtccaaggcttgctgaagaatgctatgga |
41375445 |
T |
|
| Q |
113 |
tgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatga |
199 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41375446 |
cgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatga |
41375532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 22799785 - 22799844
Alignment:
| Q |
102 |
aatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgctt |
161 |
Q |
| |
|
|||||||||||||| |||||||||| ||| || ||||| ||||| |||||||||||||| |
|
|
| T |
22799785 |
aatgctatggatgctggctctgtgagcgcgctctactttgatgtcatgctgagggcgctt |
22799844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 74699 - 74318
Alignment:
| Q |
19 |
atcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccgg |
118 |
Q |
| |
|
|||| |||||||||||| |||| || |||||||||||||| || |||||| |||||||||||| || | ||| | |||| ||||||||||| || |
|
|
| T |
74699 |
atcatatgttttgcattttgagatgcacccaattcatgctagatgttgagccatgcattcctaccgtcaagcatttgcttaagaacgctatggatgctgg |
74600 |
T |
|
| Q |
119 |
ctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggag |
218 |
Q |
| |
|
||||||||||| || ||||| |||||| || |||| || ||| ||||| ||| || |||| ||||| ||| || |||| || ||||||||||||||| |
|
|
| T |
74599 |
ttctgtgaccgctctttactttgatgtaatggtgagagcacttgacggtatcacacctgataccgctgaactcttcaatgagttttggtctcttttggag |
74500 |
T |
|
| Q |
219 |
acaaaaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcctcagtt |
318 |
Q |
| |
|
|| ||||| ||||||||||||||||| |||||||||| | |||||||||||||| |||||||| |||||||||||||| || || |||||||| |||| |
|
|
| T |
74499 |
acgaaaaatgttgcgcgctatcgcagggagataacag--gaggggacacccgttttcgcttcgtctcaggctggtacaagaggttactgcctcccaagtt |
74402 |
T |
|
| Q |
319 |
ggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctga |
402 |
Q |
| |
|
| || |||||||| || || |||||||||||||||| || |||||| | || |||||||| ||||| ||||| |||||||| |
|
|
| T |
74401 |
aatccgtcgtcgattctgcaacaactggcacaactgtcgtggagatggactaaggcgtaactaccgagggtatcatcctgctga |
74318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 23 - 405
Target Start/End: Complemental strand, 39171 - 38791
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctct |
122 |
Q |
| |
|
||||||||||||| |||| || || ||||||||| |||| ||||| |||||||||||| || || | ||| | ||| ||||||||||| || ||| |
|
|
| T |
39171 |
catgttttgcattttgagatgcactcaattcatgttggatgtcgagccatgcattcctaccgtcaaacgtttgcttaggaacgctatggatgctggttct |
39072 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||||||| || ||||| |||||| ||||||| |||||| ||||| ||| | |||| ||||| |||||| |||| || ||||||||||||||||| | |
|
|
| T |
39071 |
gtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaacttttcaatgacttttggtctcttttggagacga |
38972 |
T |
|
| Q |
223 |
aaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcctcagttggtt |
322 |
Q |
| |
|
|||| |||||||| |||||||| ||||||| || | | ||| ||| |||||||||| ||||||||||||||||||| || ||||| |||||||| || |
|
|
| T |
38971 |
aaaatgttgcgcgttatcgcagggagataatag--gagaggattcccatttccgcttcatttcaggctggtacaaaaggttgctgccccctcagttaatt |
38874 |
T |
|
| Q |
323 |
cgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgagga |
405 |
Q |
| |
|
||||||||||| || || |||||||| ||||| | || |||||| | || || ||||||||||| | ||| ||||||||||| |
|
|
| T |
38873 |
cgccgtcgattctgcaacaactggcaaaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgctgagga |
38791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 23 - 405
Target Start/End: Original strand, 32567 - 32947
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctct |
122 |
Q |
| |
|
||||||||||||| |||| || || ||||||||| |||| ||||| |||||||||||| || || | ||| | ||| ||||||||||| || ||| |
|
|
| T |
32567 |
catgttttgcattttgagatgcactcaattcatgttggatgtcgagccatgcattcctaccgtcaaacgtttgcttaggaacgctatggatgctggttct |
32666 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||||||| || ||||| |||||| ||||||| |||||| ||||| ||| | |||| ||||| |||||| |||| || ||||||||||||||||| | |
|
|
| T |
32667 |
gtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaacttttcaatgacttttggtctcttttggagacga |
32766 |
T |
|
| Q |
223 |
aaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcctcagttggtt |
322 |
Q |
| |
|
|||| |||||||| |||||||| ||||||| || | | ||| ||| |||||||||| ||||||||||||||||||| || ||||| |||||||| || |
|
|
| T |
32767 |
aaaatgttgcgcgttatcgcagggagataatag--gagaggattcccatttccgcttcatttcaggctggtacaaaaggttgctgccccctcagttaatt |
32864 |
T |
|
| Q |
323 |
cgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgagga |
405 |
Q |
| |
|
||||||||||| || || |||||||| ||||| | || |||||| | || || ||||||||||| | ||| ||||||||||| |
|
|
| T |
32865 |
cgccgtcgattctgcaacaactggcaaaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgctgagga |
32947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 402
Target Start/End: Original strand, 3761 - 4138
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctct |
122 |
Q |
| |
|
||||||||||||| |||| || || ||||||||||||| |||||| ||||||||||||||| | | || | |||| || |||||||| || ||| |
|
|
| T |
3761 |
catgttttgcattttgagatgcacttaattcatgctggatgttgagccatgcattcctaccatcaagcgtctgcttaagaacgccatggatgctggttct |
3860 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||||||| || ||||| |||||| ||||||| ||||| |||| ||| | |||| ||||| ||| || |||| || ||||||||||||||||||| |
|
|
| T |
3861 |
gtgaccgctctttactttgatgtaatgctgagagcgctcgacggcatcactcctgataccgctgaactcttcaatgacttttggtctcttttggagacaa |
3960 |
T |
|
| Q |
223 |
aaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcctcagttggtt |
322 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||| | ||||| ||| |||| |||| || ||| |||||||||| || || |||||||| | ||| ||| |
|
|
| T |
3961 |
aaaatgttgcgcgttatcgcagggagataacag--gaggggattcccatttctgctttgtctcatgctggtacaataggttgctgcctccccggttagtt |
4058 |
T |
|
| Q |
323 |
cgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctga |
402 |
Q |
| |
|
|| ||| |||| || || |||||||||||||||| || |||||| | ||||| ||||||||||| | ||| |||||||| |
|
|
| T |
4059 |
cgtcgttgattctgcaacaactggcacaactgtcgtggagatggactaagacgcaactatcgagggtttcatcctgctga |
4138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 405
Target Start/End: Original strand, 14562148 - 14562533
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctct |
122 |
Q |
| |
|
||||||||| ||| |||| ||||| ||| ||||||||| |||||| |||||||||||| || | | ||| | |||||||||||| || |||||| |
|
|
| T |
14562148 |
catgttttgtattttgagatgtactcaacacatgctggatgttgagccatgcattcctaccgtcaagcgtttgcttaggaatgctatggacgctggctct |
14562247 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||| ||| || ||||| |||||| ||||||||||| || ||||| ||| | |||| || || |||||| |||| || ||||||||||||||||| | |
|
|
| T |
14562248 |
gtgagcgctctttactttgatgtaatgctgagggcgattgacggtatcactcctgatgccactgaacttttcaatgacttttggtctcttttggagacga |
14562347 |
T |
|
| Q |
223 |
aaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctg-----cctcctcagt |
317 |
Q |
| |
|
|||| |||||||| |||||||| ||||||| || | ||||| ||| |||||||||||||||||||||||||||||| || ||| || || |||| |
|
|
| T |
14562348 |
aaaatgttgcgcgttatcgcagggagataatag--gaggggattcccatttccgcttcgtttcaggctggtacaaaaggttgctgccccccccccccagt |
14562445 |
T |
|
| Q |
318 |
tggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgagga |
405 |
Q |
| |
|
| ||||||||||||| || || |||||||||||||| | || |||||| | || || ||||||||||| | ||| ||||||||||| |
|
|
| T |
14562446 |
taattcgccgtcgattctgcaacaactggcacaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgctgagga |
14562533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 105 - 405
Target Start/End: Original strand, 13284372 - 13284670
Alignment:
| Q |
105 |
gctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttct |
204 |
Q |
| |
|
|||||||| || |||||||||| ||| || ||||| |||||| |||||||||||||| ||||| ||| | |||| || || ||| || |||| || | |
|
|
| T |
13284372 |
gctatggacgctggctctgtgagcgctctttactttgatgtaatgctgagggcgcttgacggtatcactcctgataccactgaactcttcaatgactttt |
13284471 |
T |
|
| Q |
205 |
ggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaagattc |
304 |
Q |
| |
|
|||||||||||||||| || || ||||| || |||||||| |||||||| || |||| || || ||| ||||||||||||||||||||||| || || |
|
|
| T |
13284472 |
ggtctcttttggagacgaagaatgttgctcgttatcgcagggagataacgggagggg--actcctattttcgcttcgtttcaggctggtacaagaggttg |
13284569 |
T |
|
| Q |
305 |
ctgcctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgagg |
404 |
Q |
| |
|
||||| || |||| |||| || ||||| || || |||||||||||||| | || ||||| |||||||| ||||||||||| ||| |||||||||| |
|
|
| T |
13284570 |
ctgcccccctagttaattcgtcgccgattctgcaacaactggcacaactgccctggagatgggttgagacgcaactatcgaggaattcatcctgctgagg |
13284669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 14741960 - 14742016
Alignment:
| Q |
105 |
gctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgctt |
161 |
Q |
| |
|
||||||||||| |||||||||| ||| || ||||| ||||| |||||||||||||| |
|
|
| T |
14741960 |
gctatggatgctggctctgtgagcgcgctctactttgatgtcatgctgagggcgctt |
14742016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 102 - 405
Target Start/End: Complemental strand, 19584 - 19284
Alignment:
| Q |
102 |
aatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatt |
201 |
Q |
| |
|
||||||||||| || |||||||||| ||| || ||||| |||||| | |||| |||| || ||||| ||| | |||| || || |||||| |||| | |
|
|
| T |
19584 |
aatgctatggacgctggctctgtgagcgctctttactttgatgtaattctgatggcgattgacggtatcactcctgatgccactgaacttttcaatgact |
19485 |
T |
|
| Q |
202 |
tctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaaga |
301 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||| |||||||| |||||||||| | ||||| ||| ||||| ||||||||||||||||||||| || |
|
|
| T |
19484 |
tttggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacag--gaggggattcccatttccacttcgtttcaggctggtacaagagg |
19387 |
T |
|
| Q |
302 |
ttcctgcctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctg |
401 |
Q |
| |
|
|| ||||| || ||||| |||| |||||||| || || |||||||||||||| | || |||||| | || || ||||||||||| | ||| ||||| | |
|
|
| T |
19386 |
ttgctgcc-ccccagttaattcgtcgtcgattctgcaacaactggcacaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgccg |
19288 |
T |
|
| Q |
402 |
agga |
405 |
Q |
| |
|
|||| |
|
|
| T |
19287 |
agga |
19284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 13823 - 13680
Alignment:
| Q |
24 |
atgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctctg |
123 |
Q |
| |
|
|||||||| ||| |||| ||||| ||| ||||||||| |||||| |||||||||||| || | | ||| | |||||||||||| || ||||||| |
|
|
| T |
13823 |
atgttttgtattttgagatgtactcaacacatgctggatgttgagccatgcattcctaccgtcaagcgtttgcttaggaatgctatggacgctggctctg |
13724 |
T |
|
| Q |
124 |
tgaccgccctgtacttcgatgtactgctgagggcgcttaacggt |
167 |
Q |
| |
|
||| ||| || ||||| |||||| ||||||||||| || ||||| |
|
|
| T |
13723 |
tgagcgctctttactttgatgtaatgctgagggcgattgacggt |
13680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 405
Target Start/End: Complemental strand, 36167 - 35865
Alignment:
| Q |
101 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgat |
200 |
Q |
| |
|
|||||||||||| || || || || | ||| || ||||| |||||| |||||||||||||| ||||| ||| | |||| | || ||| || |||| |
|
|
| T |
36167 |
gaatgctatggacgctggttccgtaaacgctctttactttgatgtaatgctgagggcgcttgacggtatcactcctgatatcactgaactcttcaatgac |
36068 |
T |
|
| Q |
201 |
ttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaag |
300 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| |||||||| |||||||||| | |||||| ||| || ||||||||||||||||||||||| || |
|
|
| T |
36067 |
ttctggtctcttttggagacaaagaatgttgcgcgttatcgcagggagataacag--gaggggactcccactttcgcttcgtttcaggctggtacaagag |
35970 |
T |
|
| Q |
301 |
attcctgcctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgct |
400 |
Q |
| |
|
|| ||||| || ||||| |||| || ||||| || || |||||||||||||| | | ||||| ||||||| ||||||||||| | ||| |||||| |
|
|
| T |
35969 |
gttgctgccgccccagttaattcgtcgccgattctgcaacaactggcacaactgccctagagatgggctgagacgcaactatcgagggtttcatcctgct |
35870 |
T |
|
| Q |
401 |
gagga |
405 |
Q |
| |
|
||||| |
|
|
| T |
35869 |
gagga |
35865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 402
Target Start/End: Original strand, 12276 - 12574
Alignment:
| Q |
101 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgat |
200 |
Q |
| |
|
|||||||||||| || |||||||||| ||| || ||||| ||||| |||||||||||||| ||| | ||| | |||| || || |||||| |||| |
|
|
| T |
12276 |
gaatgctatggacgctggctctgtgagcgctctttactttcatgtaatgctgagggcgcttgacgatatcactcctgataccactgaacttttcaatgac |
12375 |
T |
|
| Q |
201 |
ttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaag |
300 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| |||||||| |||||||||| | || || ||| |||| |||| |||| |||||||||||| || |
|
|
| T |
12376 |
ttttggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacag--gaggcgattcccatttctgctttgttttaggctggtacaagag |
12473 |
T |
|
| Q |
301 |
attcctgcctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgct |
400 |
Q |
| |
|
|| ||||| ||| |||| |||| |||||||| || || |||||||||||||| | || |||||| | || || ||||||||||| | ||| |||||| |
|
|
| T |
12474 |
gttgctgccccct-agttaattcgtcgtcgattctgaaacaactggcacaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgct |
12572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 402
Target Start/End: Original strand, 18027 - 18325
Alignment:
| Q |
101 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgat |
200 |
Q |
| |
|
|||||||||||| || |||||||||| ||| || ||||| ||||| |||||||||||||| ||| | ||| | |||| || || |||||| |||| |
|
|
| T |
18027 |
gaatgctatggacgctggctctgtgagcgctctttactttcatgtaatgctgagggcgcttgacgatatcactcctgataccactgaacttttcaatgac |
18126 |
T |
|
| Q |
201 |
ttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaaaag |
300 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| |||||||| |||||||||| | || || ||| |||| |||| |||| |||||||||||| || |
|
|
| T |
18127 |
ttttggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacag--gaggcgattcccatttctgctttgttttaggctggtacaagag |
18224 |
T |
|
| Q |
301 |
attcctgcctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgct |
400 |
Q |
| |
|
|| ||||| ||| |||| |||| |||||||| || || |||||||||||||| | || |||||| | || || ||||||||||| | ||| |||||| |
|
|
| T |
18225 |
gttgctgccccct-agttaattcgtcgtcgattctgaaacaactggcacaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgct |
18323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 297
Target Start/End: Complemental strand, 28880 - 28608
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatggatgccggctct |
122 |
Q |
| |
|
||||||||| ||| |||| || || ||||||||||| || |||||| |||||||||||| || | | ||| | ||| |||||||| || |||||| |
|
|
| T |
28880 |
catgttttgtattttgagatgcactcaattcatgctagatgttgagccatgcattcctaccgtcaagcgtttgcttaggaacgctatggacgctggctct |
28781 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|| | ||| || ||||| |||||| |||||||||||||| ||||| ||| | |||| || || ||| || ||| || ||||||||||||||||| | |
|
|
| T |
28780 |
gtaagcgctctttactttgatgtaatgctgagggcgcttgacggtatcactcatgataccactgaactcttcattgacttttggtctcttttggagacga |
28681 |
T |
|
| Q |
223 |
aaaacgttgcgcgctatcgcagagagataacaggcggggggacacccgtttccgcttcgtttcaggctggtacaa |
297 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||| | |||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
28680 |
aaaatgttgcgcgttatcgcagggagataacag--gaggggactcccattttcgcttcgtttcaggctggtacaa |
28608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 405
Target Start/End: Original strand, 19030339 - 19030469
Alignment:
| Q |
275 |
cgcttcgtttcaggctggtacaaaagattcctgcctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagac |
374 |
Q |
| |
|
|||||||||| ||||||||| || || || ||||| | ||||| |||| |||||||| || || |||||||||||||| | || ||||| | |||| |
|
|
| T |
19030339 |
cgcttcgttttaggctggtataagaggttgctgcccctccagttaattcgtcgtcgattctgcaacaactggcacaactgccctggagatgggctaagac |
19030438 |
T |
|
| Q |
375 |
gtaactatcgaggttatcaccctgctgagga |
405 |
Q |
| |
|
| ||||||||||| | ||| ||||||||||| |
|
|
| T |
19030439 |
gcaactatcgagggtttcatcctgctgagga |
19030469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 9340 - 9280
Alignment:
| Q |
101 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgctt |
161 |
Q |
| |
|
||||||||||||||||||||| |||| ||| || ||||| ||| | |||||||||||||| |
|
|
| T |
9340 |
gaatgctatggatgccggctccgtgagcgcactctactttgatatcatgctgagggcgctt |
9280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 384922 - 384862
Alignment:
| Q |
101 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgagggcgctt |
161 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||| ||||| || ||||||||||| |
|
|
| T |
384922 |
gaatgctatggatgccggctctgtgagcgagctctactttgatgtcatgttgagggcgctt |
384862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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