View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_461 (Length: 201)

Name: NF6876A_low_461
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_461
NF6876A_low_461
[»] chr3 (3 HSPs)
chr3 (9-182)||(20787688-20787860)
chr3 (18-182)||(38348777-38348940)
chr3 (9-179)||(10028196-10028364)
[»] scaffold0003 (1 HSPs)
scaffold0003 (101-171)||(55978-56049)
[»] chr6 (2 HSPs)
chr6 (101-171)||(27431314-27431385)
chr6 (14-169)||(12515428-12515577)
[»] chr4 (3 HSPs)
chr4 (101-171)||(18070173-18070244)
chr4 (102-182)||(42614932-42615013)
chr4 (14-56)||(42614844-42614886)
[»] scaffold0061 (1 HSPs)
scaffold0061 (14-182)||(35263-35432)
[»] scaffold0017 (1 HSPs)
scaffold0017 (14-182)||(163347-163516)
[»] chr1 (2 HSPs)
chr1 (102-182)||(40700638-40700719)
chr1 (14-56)||(40700552-40700594)


Alignment Details
Target: chr3 (Bit Score: 70; Significance: 9e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 20787860 - 20787688
Alignment:
Q  9 atgagatggacatcctagatctacccaagagaaaattagataatgtaa-nnnnnnnnngtgtggagaatgtcccatttgttgggnnnnnnnnnccatcta 107  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||           |||||||||||| ||||||||| ||          ||||||    
T  20787860 atgacatggacatcatagatctacccaagagaaaattagataatgtaattttttttttttgtggagaatgt-ccatttgtttggtttttttt--catcta 20787764  T
Q  108 taatatatgttatgttcgg-ttcatattctattgaaattttgcctttagattgttggttagtcctctttgaatatt 182  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20787763 taatatatgttatgttcggtttcatattctattgaaattttgcctttagattgttggttagtcctgtttgaatatt 20787688  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 38348777 - 38348940
Alignment:
Q  18 acatcctagatctacccaagagaaaattagataatgtaannnnnnnnngtgtggagaatgtcccatttgttgggnnnnnnnnnccatctataatatatgt 117  Q
    ||||| |||||||| ||||||||||||||||||||||||          |||||||||||||| ||||||||||         | |||||||||||||||    
T  38348777 acatcatagatctaaccaagagaaaattagataatgtaatttctttttttgtggagaatgtcc-atttgttgggtttttttttc-atctataatatatgt 38348874  T
Q  118 tatgttcggtt-catattctattgaaattttgcctttagattgttggttagtcctctttgaatatt 182  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  38348875 tatgttcggtttcatattctattgaaattttgcctttagattgttggttagtcatgtttgaatatt 38348940  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 10028364 - 10028196
Alignment:
Q  9 atgagatggacatcctagatctacccaagagaaaattagataatgtaannnnnnnnngtgtggagaatgtcccatttgttgggnnnnnnnnnccatctat 108  Q
    |||| ||||||||| |||||||| ||||||||||||||||||||||||          |||||||||||||| ||||||||||         | ||||||    
T  10028364 atgacatggacatcatagatctatccaagagaaaattagataatgtaattttttttt-tgtggagaatgtcc-atttgttgggtttttttttc-atctat 10028268  T
Q  109 aatatatgttatgttcggtt-catattctattgaaattttgcctttagattgttggttagtcctctttgaat 179  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  10028267 aatatatgttatgttcggtttcatattctattgaaattttgcctttagattgttggttagtcgtgtttgaat 10028196  T

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Target: scaffold0003 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 56049 - 55978
Alignment:
Q  101 ccatctataatatatgttatgttcggtt-catattctattgaaattttgcctttagattgttggttagtcct 171  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  56049 ccatctataatatatgttatgttcggtttcatattctattgaaattttgcctttagattgttggttagtcct 55978  T

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Target: chr6 (Bit Score: 64; Significance: 3e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 27431314 - 27431385
Alignment:
Q  101 ccatctataatatatgttatgttcggtt-catattctattgaaattttgcctttagattgttggttagtcct 171  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27431314 ccatctataatatatgttatgttcggtttcatattctattgaaattttgcctttagattgttggttagtcct 27431385  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 169
Target Start/End: Original strand, 12515428 - 12515577
Alignment:
Q  14 atggacatcctagatctacccaagagaaaattagataatgtaannnnnnnnngtgtggagaatgtcccatttgttgggnnnnnnnnnccatctataatat 113  Q
    ||||||||| ||||||||||||| |||||||||||||||||||          | |||||||||||| ||||||||||          ||||||||||||    
T  12515428 atggacatcatagatctacccaaaagaaaattagataatgtaattttattttttttggagaatgtcc-atttgttgggttttttt---catctataatat 12515523  T
Q  114 atgttatgttcgg-ttcatattctattgaaattttgcctttagattgttggttagtc 169  Q
    ||||||||||||| ||||||   ||||||||||||| ||| ||||||||||||||||    
T  12515524 atgttatgttcggtttcata---tattgaaattttgtcttgagattgttggttagtc 12515577  T

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Target: chr4 (Bit Score: 64; Significance: 3e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 18070244 - 18070173
Alignment:
Q  101 ccatctataatatatgttatgttcggtt-catattctattgaaattttgcctttagattgttggttagtcct 171  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18070244 ccatctataatatatgttatgttcggtttcatattctattgaaattttgcctttagattgttggttagtcct 18070173  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 42614932 - 42615013
Alignment:
Q  102 catctataatatatgttatgttcggtt-catattctattgaaattttgcctttagattgttggttagtcctctttgaatatt 182  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  42614932 catctaaaatatatgttatgttcggtttcatattctattgaaatttttcctttagattgttagttagtcctgtttgaatatt 42615013  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 42614844 - 42614886
Alignment:
Q  14 atggacatcctagatctacccaagagaaaattagataatgtaa 56  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  42614844 atggacatcatagatctacccaagagaaaattagataatgtaa 42614886  T

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Target: scaffold0061 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 35263 - 35432
Alignment:
Q  14 atggacatcctagatctacccaagagaaaattagataatgtaannnnnnnnngtgtggagaatgtcccatttgttgggnnnnnnnnnccatctataatat 113  Q
    ||||||||| |||||||||||||||||||||||||||||||||          |||||||||||||| ||||||||            ||||||||||||    
T  35263 atggacatcatagatctacccaagagaaaattagataatgtaattttttttt-tgtggagaatgtcc-atttgttgcattttttttttcatctataatat 35360  T
Q  114 atgttat--gttcggtt-catattctattgaaattttgcctttagattgttggttagtcctctttgaatatt 182  Q
    |||||||  |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  35361 atgttatatgttcggtttcatattctattgaaattttgcctttaaattgttggttagtcctgtttgaatatt 35432  T

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Target: scaffold0017 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 163516 - 163347
Alignment:
Q  14 atggacatcctagatctacccaagagaaaattagataatgtaannnnnnnnngtgtggagaatgtcccatttgttgggnnnnnnnnnccatctataatat 113  Q
    ||||||||| |||||||||||||||||||||||||||||||||          |||||||||||||| ||||||||            ||||||||||||    
T  163516 atggacatcatagatctacccaagagaaaattagataatgtaattttttttt-tgtggagaatgtcc-atttgttgcattttttttttcatctataatat 163419  T
Q  114 atgttat--gttcggtt-catattctattgaaattttgcctttagattgttggttagtcctctttgaatatt 182  Q
    |||||||  |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  163418 atgttatatgttcggtttcatattctattgaaattttgcctttaaattgttggttagtcctgtttgaatatt 163347  T

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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 40700638 - 40700719
Alignment:
Q  102 catctataatatatgttatgttcggtt-catattctattgaaattttgcctttagattgttggttagtcctctttgaatatt 182  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||| ||||||||| ||||||||||    
T  40700638 catctataatatatgttatgttcggtttcatattctattgaaattttttctttagattgttagttagtcctgtttgaatatt 40700719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 40700552 - 40700594
Alignment:
Q  14 atggacatcctagatctacccaagagaaaattagataatgtaa 56  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  40700552 atggacatcatagatctacccaagagaaaattagataatgtaa 40700594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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