View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_47 (Length: 406)
Name: NF6876A_low_47
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_47 |
 | |
|
| [»] chr3 (31 HSPs) |
| |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 31)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 9839017 - 9838627
Alignment:
| Q |
16 |
ggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9839017 |
ggacatcaagattattgctatcccatgttatggaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
9838918 |
T |
|
| Q |
116 |
tgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
215 |
Q |
| |
|
||| ||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9838917 |
cgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
9838818 |
T |
|
| Q |
216 |
cctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9838817 |
cctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctg |
9838718 |
T |
|
| Q |
316 |
aactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcaca |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9838717 |
aactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcaca |
9838627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 9849895 - 9849505
Alignment:
| Q |
16 |
ggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9849895 |
ggacatcaagattattgctatcccatgttatggaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
9849796 |
T |
|
| Q |
116 |
tgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
215 |
Q |
| |
|
||| ||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9849795 |
cgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
9849696 |
T |
|
| Q |
216 |
cctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9849695 |
cctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctg |
9849596 |
T |
|
| Q |
316 |
aactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcaca |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9849595 |
aactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcaca |
9849505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 406
Target Start/End: Original strand, 10375758 - 10376148
Alignment:
| Q |
16 |
ggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10375758 |
ggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
10375857 |
T |
|
| Q |
116 |
tgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10375858 |
tgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgtgcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
10375957 |
T |
|
| Q |
216 |
cctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctg |
315 |
Q |
| |
|
|||||||| ||||| | ||||||| | | |||||||||||||||||||| || ||||| ||| ||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
10375958 |
cctatattattatgcgatgtgtctgtctctgatagcaacatgttcattatagtgtctttatcatccttcctacccaccatgacagattcatttaccactg |
10376057 |
T |
|
| Q |
316 |
aactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcaca |
406 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| | | ||||| ||||||||| |
|
|
| T |
10376058 |
aacttgaaggtgttctacgagaaactctaccacttttagtttgcagaccaagtatatctttatactgtgcaaagaattgcaggctatcaca |
10376148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 406
Target Start/End: Complemental strand, 11769386 - 11769000
Alignment:
| Q |
20 |
atcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgcc |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
11769386 |
atcaagattattgctatcccaagttcttgaagtgaccgattcaaggagagacctggttactctcataatatcaaaatcctcagacacgcaagcccatgcc |
11769287 |
T |
|
| Q |
120 |
ttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaacaccta |
219 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11769286 |
ttcaaatcaaaatattgttgaacttctttatcattgtagacaagttgagcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacaccta |
11769187 |
T |
|
| Q |
220 |
tattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctgaact |
319 |
Q |
| |
|
|||| |||||| |||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| ||||||| |
|
|
| T |
11769186 |
tattattatggattgtgtctctctgtgatagcaacatgttcattattgtctctttgtcattcttcctacccactatgacagattcatttaccactgaact |
11769087 |
T |
|
| Q |
320 |
agaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcaca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||| ||||||||| ||| ||||| |
|
|
| T |
11769086 |
tgaaggtgttctacgagaaactctagcacttttagtttgcaaacctaatatatctttattttgtgcaaaaagttgcaggctttcaca |
11769000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 406
Target Start/End: Original strand, 10433957 - 10434347
Alignment:
| Q |
16 |
ggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
10433957 |
ggacatcaagattattgctatcccaagttctggaagtgaccgattcaaggagagacttggttactttcaaaatatcaaaatcctgagacacacaagccca |
10434056 |
T |
|
| Q |
116 |
tgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
215 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10434057 |
ggccttcaaatcaaaatggtgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaaca |
10434156 |
T |
|
| Q |
216 |
cctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctg |
315 |
Q |
| |
|
||||| || ||||| ||||||| ||| || ||||||||||||||||||||||||||||||||| ||||||| || |||| || ||||||||| ||| | | |
|
|
| T |
10434157 |
cctatcttattatgagttgtgtttctctgtgatagcaacatgttcattattgtctctttgtcatccttccttccaaccatgaaagattcattgaccacag |
10434256 |
T |
|
| Q |
316 |
aactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcaca |
406 |
Q |
| |
|
|||| ||||| ||||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
10434257 |
aacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcaca |
10434347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 10127084 - 10126750
Alignment:
| Q |
16 |
ggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
10127084 |
ggacatcaagattattgctatcccaagttgtggaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaaccca |
10126985 |
T |
|
| Q |
116 |
tgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10126984 |
tgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcccaaacctcccatgcccaaaattgcaacaaca |
10126885 |
T |
|
| Q |
216 |
cctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctg |
315 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
10126884 |
cctatattattatgggatgtgtctctctgagatagcaacatgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactg |
10126785 |
T |
|
| Q |
316 |
aactagaaggtgttctacgagaaactctagcactt |
350 |
Q |
| |
|
|||| ||||| |||| ||||||||||| ||||| |
|
|
| T |
10126784 |
aacttgaaggcagtctatgagaaactctaccactt |
10126750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 10663682 - 10663348
Alignment:
| Q |
16 |
ggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
115 |
Q |
| |
|
|||||||||||| ||||||||||| ||| | |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
10663682 |
ggacatcaagatctttgctatcccaagttgtggaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaaccca |
10663583 |
T |
|
| Q |
116 |
tgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10663582 |
tgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
10663483 |
T |
|
| Q |
216 |
cctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctg |
315 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| |
|
|
| T |
10663482 |
cctatattattatgggttgtgtctctctgtgatagcaacatgttcattattgtctctttgtcacccttcctacccaccatgagagattcatttaccactg |
10663383 |
T |
|
| Q |
316 |
aactagaaggtgttctacgagaaactctagcactt |
350 |
Q |
| |
|
|||| ||||| |||| ||||||||||| ||||| |
|
|
| T |
10663382 |
aacttgaaggcagtctatgagaaactctaccactt |
10663348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 376
Target Start/End: Original strand, 10363711 - 10364071
Alignment:
| Q |
16 |
ggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
115 |
Q |
| |
|
||||||||||||||||||| ||| | ||| | |||||| | ||||||||||||||||| |||||||||| |||||||||||||||||| |||||| |||| |
|
|
| T |
10363711 |
ggacatcaagattattgctttccgaagttatggaagtggcagattcaaggagagactttgttactctcataatatcaaaatcctcagagacacaaaccca |
10363810 |
T |
|
| Q |
116 |
tgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10363811 |
tgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaaca |
10363910 |
T |
|
| Q |
216 |
cctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctg |
315 |
Q |
| |
|
|||||||| || | |||||| ||||| | || |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
10363911 |
cctatattattgtcggttgtttctctctttgaaagcaacatgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactg |
10364010 |
T |
|
| Q |
316 |
aactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatcttt |
376 |
Q |
| |
|
|||| |||||||||||||| ||||| || | |||||||||||||||| |||||||||||| |
|
|
| T |
10364011 |
aacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaagtatatcttt |
10364071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 10088946 - 10088556
Alignment:
| Q |
16 |
ggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
115 |
Q |
| |
|
||||| |||||| |||||||||| | ||| | |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
10088946 |
ggacaccaagatcattgctatccgaagttgtcgaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaaccca |
10088847 |
T |
|
| Q |
116 |
tgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
215 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10088846 |
tgccttcaaatcaaaatggtgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaaca |
10088747 |
T |
|
| Q |
216 |
cctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctg |
315 |
Q |
| |
|
|||||||| || | |||||| ||||| | || |||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| | | |
|
|
| T |
10088746 |
cctatattattgtcggttgtttctctctttgaaagcaacatgttcattattgtctctttatcatccttcctacccaccatgacagattcatttaccaccg |
10088647 |
T |
|
| Q |
316 |
aactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcaca |
406 |
Q |
| |
|
|||| ||||| |||||| | ||||| || || |||||||||||| ||||||||||||||||||||||||| | | ||||||||| ||||| |
|
|
| T |
10088646 |
aacttgaaggagttctatgtgaaacccttgcgattttagtttgcagaccaagtatatctttattctgtgcaaacaattgcaagctttcaca |
10088556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 10195829 - 10195439
Alignment:
| Q |
16 |
ggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
115 |
Q |
| |
|
||||| |||||| |||||||||| | ||| | |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
10195829 |
ggacaccaagatcattgctatccgaagttgtcgaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaaccca |
10195730 |
T |
|
| Q |
116 |
tgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
215 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10195729 |
tgccttcaaatcaaaatggtgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaaca |
10195630 |
T |
|
| Q |
216 |
cctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctg |
315 |
Q |
| |
|
|||||||| || | |||||| ||||| | || |||||||||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||| ||| |
|
|
| T |
10195629 |
cctatattattgtcggttgtttctctctttgaaagcaacatgttcattattgtctctttatcatcctttctacccaccatgacagattcatttaccactg |
10195530 |
T |
|
| Q |
316 |
aactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcaca |
406 |
Q |
| |
|
|||| ||||| |||||| | ||||| || || |||||||||||| ||||||||||||||||||||||||| | | ||||||||| ||||| |
|
|
| T |
10195529 |
aacttgaaggagttctatgtgaaacccttgcgtttttagtttgcagaccaagtatatctttattctgtgcaaacaattgcaagctttcaca |
10195439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 10580757 - 10580395
Alignment:
| Q |
16 |
ggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
115 |
Q |
| |
|
||||||||||||||||||| ||| | ||| | |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
10580757 |
ggacatcaagattattgctttccgaagttgtggaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaaccca |
10580658 |
T |
|
| Q |
116 |
tgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
215 |
Q |
| |
|
||||||| ||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10580657 |
cgccttcatgtcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
10580558 |
T |
|
| Q |
216 |
cctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctg |
315 |
Q |
| |
|
|||||||| |||||| |||||| ||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| || | | | | |
|
|
| T |
10580557 |
cctatattattatggattgtgtttctctgtgatagcaacatgttcattattgtctctttgtcatccttcctacccaccatgacagattcgttaaacacag |
10580458 |
T |
|
| Q |
316 |
aactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttat |
378 |
Q |
| |
|
|||| ||||| |||| | |||||||||||||||| ||||||||||||||||| | |||||||| |
|
|
| T |
10580457 |
aacttgaaggagttccatgagaaactctagcactcttagtttgcaaaccaaggacatctttat |
10580395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 10032159 - 10031825
Alignment:
| Q |
16 |
ggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
115 |
Q |
| |
|
|||||||||||| ||||||||| | ||| | |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10032159 |
ggacatcaagatctttgctatccgaagttgtggaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaagccca |
10032060 |
T |
|
| Q |
116 |
tgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10032059 |
ggccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
10031960 |
T |
|
| Q |
216 |
cctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctg |
315 |
Q |
| |
|
|||||||| ||||||| || |||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||| ||| |
|
|
| T |
10031959 |
cctatattattatgggatgcgtctctctgtgatagcaacatgttcattattgtctctttgtcatccttcctacccaccatgagagattcatttaccactg |
10031860 |
T |
|
| Q |
316 |
aactagaaggtgttctacgagaaactctagcactt |
350 |
Q |
| |
|
|||| ||||| |||| ||||||||||| ||||| |
|
|
| T |
10031859 |
aacttgaaggcagtctatgagaaactctaccactt |
10031825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 10184398 - 10184064
Alignment:
| Q |
16 |
ggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
10184398 |
ggacatcaagattattgctatcccaagttgtggaagtgacagattcaaggagagacttggttactctcataatatcaaaatcctcggacacacaagccca |
10184299 |
T |
|
| Q |
116 |
tgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
215 |
Q |
| |
|
||| ||| |||||||||||||||||||| || |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10184298 |
cgccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgagcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
10184199 |
T |
|
| Q |
216 |
cctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctg |
315 |
Q |
| |
|
|||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
10184198 |
cctatagcattatgggttgtgtctctctgtgacagcaacatgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactg |
10184099 |
T |
|
| Q |
316 |
aactagaaggtgttctacgagaaactctagcactt |
350 |
Q |
| |
|
|||| ||||| |||| ||||||||||| ||||| |
|
|
| T |
10184098 |
aacttgaaggcagtctatgagaaactctaccactt |
10184064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 21 - 350
Target Start/End: Complemental strand, 10260849 - 10260520
Alignment:
| Q |
21 |
tcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgcct |
120 |
Q |
| |
|
|||||||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
10260849 |
tcaagattattgatatcccaatttctagaagtgactgattcaaggagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgcct |
10260750 |
T |
|
| Q |
121 |
tcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctat |
220 |
Q |
| |
|
||| ||||||||||||||||||| || |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10260749 |
tcatgtcaaaatgttgttgaacttctttatcattgtaaacaagttgagcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctat |
10260650 |
T |
|
| Q |
221 |
attgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctgaacta |
320 |
Q |
| |
|
||| || | |||||| ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
10260649 |
attattgttggttgtttctctctgtgatagcaacatgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaactt |
10260550 |
T |
|
| Q |
321 |
gaaggtgttctacgagaaactctagcactt |
350 |
Q |
| |
|
||||| |||| ||||||||||| ||||| |
|
|
| T |
10260549 |
gaaggcagtctatgagaaactctaccactt |
10260520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 386
Target Start/End: Complemental strand, 10077425 - 10077052
Alignment:
| Q |
16 |
ggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
115 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10077425 |
ggacatcaagatcattgttatcccaagttctagaagtgatcgattcaaggagagacttggttactctcataatatcaaaatcctcagacacacaagccca |
10077326 |
T |
|
| Q |
116 |
tgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
215 |
Q |
| |
|
||||| |||||||||||| | | ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10077325 |
tgcctgcaaatcaaaatggtatcgaactttataatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
10077226 |
T |
|
| Q |
216 |
cctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctg |
315 |
Q |
| |
|
||||| || ||||||||| | | | |||||||||||||||||||||||||||||||||| || | |||| |||| |||||||||||||| ||| |
|
|
| T |
10077225 |
cctatcttattatgggttccgcccatccctgatagcaacatgttcattattgtctctttgtcacgctccataccaaccatctcagattcatttaccactg |
10077126 |
T |
|
| Q |
316 |
aactagaaggtgttctacgagaa---actctagcacttttagtttgcaaaccaagtatatctttattctgtgca |
386 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| |||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
10077125 |
aacttgaaggtgttctacgagaaattactctagcaattttagtttgcagaccaagtacatctttattctgtgca |
10077052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 11130943 - 11131319
Alignment:
| Q |
20 |
atcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgcc |
119 |
Q |
| |
|
||||||||||||| | ||||| | ||||||||||| ||||||||||||| || |||||||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
11130943 |
atcaagattattgttttcccaagcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctccgatacacaagcccatgct |
11131042 |
T |
|
| Q |
120 |
ttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaacaccta |
219 |
Q |
| |
|
|| | |||||| |||| |||||||||||||||||||||| ||| ||| || ||||| |||||||| | ||||||||| || ||||||||||||||||| | |
|
|
| T |
11131043 |
ttgagatcaaagtgttcttgaactttttcatcattgtaagcaatttgtgcaagggttgtttttccgacacctcccatacctaaaattgcaacaacaccga |
11131142 |
T |
|
| Q |
220 |
tattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctgaact |
319 |
Q |
| |
|
||||||||| | | ||| || | ||||||||||||||| ||||||||||||||||| |||| ||||| |||| || |||||||| ||| | ||||| |
|
|
| T |
11131143 |
tattgttattgctagtgctgctctttgatagcaacatgttcgttattgtctctttgtcatcctttctaccaaccatgaatgattcattaaccacagaact |
11131242 |
T |
|
| Q |
320 |
agaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgca |
396 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||||||| |||||||| |||||||| || |||||| ||| ||||| |
|
|
| T |
11131243 |
agaaggtgttctatggaaaattctagcacttttagtttgtaaaccaaggatatctttgttttgtgcaaaaatttgca |
11131319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 11148771 - 11149147
Alignment:
| Q |
20 |
atcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgcc |
119 |
Q |
| |
|
||||||||||||| | ||||| | ||||||||||| ||||||||||||| || |||||||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
11148771 |
atcaagattattgttttcccaagcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctccgatacacaagcccatgct |
11148870 |
T |
|
| Q |
120 |
ttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaacaccta |
219 |
Q |
| |
|
|| | |||||| |||| |||||||||||||||||||||| ||| ||| || ||||| |||||||| | ||||||||| || ||||||||||||||||| | |
|
|
| T |
11148871 |
ttgagatcaaagtgttcttgaactttttcatcattgtaagcaatttgtgcaagggttgtttttccgacacctcccatacctaaaattgcaacaacaccga |
11148970 |
T |
|
| Q |
220 |
tattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctgaact |
319 |
Q |
| |
|
||||||||| | | ||| || | ||||||||||||||| ||||| ||||||||||| |||| ||||| |||| || |||||||| ||| | ||||| |
|
|
| T |
11148971 |
tattgttattgctagtgctgctctttgatagcaacatgttcgttattatctctttgtcatcctttctaccaaccatgaatgattcattaaccacagaact |
11149070 |
T |
|
| Q |
320 |
agaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgca |
396 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||| || |||||| ||| ||||| |
|
|
| T |
11149071 |
agaaggtgttctatggaaaattctagcacttttagtttgcaaaccaaggatatctttgttttgtgcaaaaatttgca |
11149147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 24 - 402
Target Start/End: Complemental strand, 10889454 - 10889076
Alignment:
| Q |
24 |
agattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgccttca |
123 |
Q |
| |
|
||||||||| | ||||| | ||||||||| || |||||||| |||| || ||||| | |||||||||||||||||||| |||||||||||||| || | |
|
|
| T |
10889454 |
agattattgttttcccaagctcttgaagtcacagattcaagaagagttttagttacagttaaaatatcaaaatcctcagatacacaagcccatgctttga |
10889355 |
T |
|
| Q |
124 |
aatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatatt |
223 |
Q |
| |
|
|||||| || | |||||||||||||||||||||||||||||| || || || ||||| || | ||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
10889354 |
gatcaaagtgctcttgaactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcaacaacaccgatatt |
10889255 |
T |
|
| Q |
224 |
gttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctgaactagaa |
323 |
Q |
| |
|
||||| | ||| || | ||||||||||||||||||||||||||||| ||| | || ||||| |||| |||||||||||| || ||||||| ||| |
|
|
| T |
10889254 |
gttattcctagtgctgctctctgatagcaacatgttcattattgtctctttatcatcatttctaccaaccatgacagattcattaactactgaacttgaa |
10889155 |
T |
|
| Q |
324 |
ggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctat |
402 |
Q |
| |
|
|| ||||||||||||||| || || ||||||||||||||||||| |||||||||| |||||| ||||||||||||||| |
|
|
| T |
10889154 |
ggggttctacgagaaactttaccaattttagtttgcaaaccaaggatatctttatgttgtgcaaaaagttgcaagctat |
10889076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 406
Target Start/End: Original strand, 11159934 - 11160320
Alignment:
| Q |
20 |
atcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgcc |
119 |
Q |
| |
|
||||||||||||| | ||||| | |||||||||||| |||||||| |||| || ||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
11159934 |
atcaagattattggtttcccaagctcttgaagtgacagattcaagaagagttttagttacagataaaatatcaaaatcctcagatacacaagcccatgct |
11160033 |
T |
|
| Q |
120 |
ttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaacaccta |
219 |
Q |
| |
|
|| ||||||||||| | |||||||||||||| ||||||||||||||| || || || ||||| || | ||||||||| || |||||||||||||| |||| |
|
|
| T |
11160034 |
ttgaaatcaaaatgatcttgaactttttcattattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcaacaacgccta |
11160133 |
T |
|
| Q |
220 |
tattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctgaact |
319 |
Q |
| |
|
||||||||| | ||| || | ||||||||||||||||||||||||||||| ||| | || ||||| |||| ||||||| |||| || ||||||| |
|
|
| T |
11160134 |
tattgttattgccagtgctactctctgatagcaacatgttcattattgtctctttatcatcatttctaccaaccatgacagatgcattaactactgaact |
11160233 |
T |
|
| Q |
320 |
agaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcaca |
406 |
Q |
| |
|
||||| ||||||||||||||| || || ||||| ||||||||||||| |||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
11160234 |
tgaaggggttctacgagaaactttaccaattttactttgcaaaccaaggatatctttatgttgtgcgaaaagttgcaagctatcaca |
11160320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 406
Target Start/End: Complemental strand, 8861438 - 8861052
Alignment:
| Q |
20 |
atcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgcc |
119 |
Q |
| |
|
||||||||||||| | ||||| | |||||||||||| |||||||| |||| || ||||| | |||||||||||||||| || |||||||||||||| |
|
|
| T |
8861438 |
atcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacagttgaaatatcaaaatcctctgatacacaagcccatgct |
8861339 |
T |
|
| Q |
120 |
ttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaacaccta |
219 |
Q |
| |
|
|| | |||||| || | |||||||||||||||||||||||||||||| || || || ||||| || | ||||||||| || ||||||||||||||||| | |
|
|
| T |
8861338 |
ttgagatcaaagtgctcttgaactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcaacaacaccga |
8861239 |
T |
|
| Q |
220 |
tattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctgaact |
319 |
Q |
| |
|
||||||||| | ||| || | ||||||||||||||||||| ||||||||| ||| | || ||||| |||| |||||||||||| || ||||||| |
|
|
| T |
8861238 |
tattgttattcctagtgctgctctctgatagcaacatgttcattactgtctctttatcatcatttctaccaaccatgacagattcattaactactgaact |
8861139 |
T |
|
| Q |
320 |
agaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcaca |
406 |
Q |
| |
|
||||| ||||||||||||||| || || ||||||||||||||||||| |||||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
8861138 |
tgaaggggttctacgagaaactttaccaattttagtttgcaaaccaaggatatctttatgttgtgcgaaaatttgcaagctatcaca |
8861052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 57 - 228
Target Start/End: Complemental strand, 10527452 - 10527281
Alignment:
| Q |
57 |
gattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgt |
156 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||| |||||||| || ||| || |||| ||||| | ||||||||| |||| ||| ||||||||||||| |
|
|
| T |
10527452 |
gattcaatgagagacttggttactctcacaacatcgaaatcctctgatacataaacccaggccttgagatcaaaatggtgttcaaccttttcatcattgt |
10527353 |
T |
|
| Q |
157 |
aaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttat |
228 |
Q |
| |
|
|||||||||| || ||||| ||||| || | ||||||||| ||||| |||||||||||||||| ||| |||| |
|
|
| T |
10527352 |
aaacaagttgtgcaagggttgttttaccgacacctcccatacccaagattgcaacaacacctaaattattat |
10527281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 57 - 350
Target Start/End: Complemental strand, 10500671 - 10500375
Alignment:
| Q |
57 |
gattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgt |
156 |
Q |
| |
|
|||||||||||||| ||||||| ||||| || ||| |||||||| | |||||| ||||||||||| ||||||||||| || || ||| || || |||| |
|
|
| T |
10500671 |
gattcaaggagagatttggttattctcacaacatcgaaatcctccggtacacaaatccatgccttcagatcaaaatgttcttcaattttatcgtcgttgt |
10500572 |
T |
|
| Q |
157 |
aaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttat---gggttgtgtctctttgagatagcaa |
253 |
Q |
| |
|
|||||||||| || || || ||||| || | |||||||| |||||||||||||||||||||| ||| |||| | ||| | | | |||| ||| |
|
|
| T |
10500571 |
aaacaagttgagcaagtgttgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatttctgcctgttccaatatctgataccaa |
10500472 |
T |
|
| Q |
254 |
catgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactctagcactt |
350 |
Q |
| |
|
||| || | | | | ||||| ||| | ||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
10500471 |
catattgacgagtctatctttatcatcattcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgagaaactctaccactt |
10500375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 57 - 228
Target Start/End: Complemental strand, 10517579 - 10517408
Alignment:
| Q |
57 |
gattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgt |
156 |
Q |
| |
|
|||||||||| |||||||||| |||| | || ||||||||||||||| |||||| |||| || || |||||||||||||||| ||||||| ||||||||| |
|
|
| T |
10517579 |
gattcaaggatagacttggttgctctaataacatcaaaatcctcagatacacaaacccaggctttgaaatcaaaatgttgttcaacttttgcatcattgt |
10517480 |
T |
|
| Q |
157 |
aaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttat |
228 |
Q |
| |
|
|||||| || || ||||| ||||| || | |||||||| |||| ||||||| ||||||||| ||| |||| |
|
|
| T |
10517479 |
aaacaaactgtgcaagggtcgttttaccgacgcctcccatacccacaattgcagcaacacctaaattattat |
10517408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 75 - 396
Target Start/End: Complemental strand, 13333001 - 13332680
Alignment:
| Q |
75 |
gttactctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgaggg |
174 |
Q |
| |
|
|||||||||| |||||| |||||||| || |||||| |||| | |||| ||||||||| | |||||||| || |||||| |||| ||||||||| || | |
|
|
| T |
13333001 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagag |
13332902 |
T |
|
| Q |
175 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt |
274 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| | | | ||| ||| ||| | || | ||||| |||||| | || | | ||||||| |
|
|
| T |
13332901 |
tggttttgccaacaccgcccatacccaaaattgcaaccacaccaacactactattggtagtgccactgtcagatatcaacatactaatgagtctctcttt |
13332802 |
T |
|
| Q |
275 |
gtcacccttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatct |
374 |
Q |
| |
|
||| |||||||||| |||| ||||||||||||||| |||||| ||||| |||||| |||||||||| || || ||||||||| ||||| |||||| |
|
|
| T |
13332801 |
atcatccttcctaccaaccataacagattcatttaccattgaacttgaaggcgttctaagagaaactctcgcgctcacagtttgcaagccaagaatatct |
13332702 |
T |
|
| Q |
375 |
ttattctgtgcataaagttgca |
396 |
Q |
| |
|
| | |||||| ||||||||| |
|
|
| T |
13332701 |
ctctgttgtgcaaaaagttgca |
13332680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 11781957 - 11782128
Alignment:
| Q |
57 |
gattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgt |
156 |
Q |
| |
|
|||||||||||||||||||||| ||| | || ||| |||||||| || |||||| |||| | || |||||||||||||||| |||||| ||||||||| |
|
|
| T |
11781957 |
gattcaaggagagacttggttattctaacaacatcgaaatcctccgatacacaaacccagactttgaaatcaaaatgttgttcaactttcacatcattgt |
11782056 |
T |
|
| Q |
157 |
aaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttat |
228 |
Q |
| |
|
||||||| || || ||||| ||||| || | |||||||| ||||||||||| |||||||||| ||| |||| |
|
|
| T |
11782057 |
aaacaagctgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcgacaacacctaaattattat |
11782128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 343
Target Start/End: Complemental strand, 13344183 - 13343918
Alignment:
| Q |
78 |
actctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtag |
177 |
Q |
| |
|
||||||| |||||| |||||||| || |||||| |||| | |||| ||||||||| | |||||||| || |||||| |||| ||||||||| || || | |
|
|
| T |
13344183 |
actctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtgg |
13344084 |
T |
|
| Q |
178 |
tttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtc |
277 |
Q |
| |
|
|||| || | ||| ||||| |||||||||||||| ||||| ||| | ||| ||| ||| | || | ||||| |||||| | || | | ||||||| || |
|
|
| T |
13344083 |
ttttgccaacaccgcccatacccaaaattgcaaccacaccaatactactattggtagtgccactgtcagatatcaacatactaatgagtctctctttatc |
13343984 |
T |
|
| Q |
278 |
acccttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactct |
343 |
Q |
| |
|
| |||||||||| |||| ||||||||||||||| |||||| ||||||||||| |||||||||| |
|
|
| T |
13343983 |
atccttcctaccaaccataacagattcatttaccattgaacttgaaggtgttcttagagaaactct |
13343918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 75 - 343
Target Start/End: Complemental strand, 13289762 - 13289494
Alignment:
| Q |
75 |
gttactctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgaggg |
174 |
Q |
| |
|
||||||||||||||||| |||||||| || |||||| |||| | |||| ||||||||| | |||||||| || |||||| |||| ||||||||| || | |
|
|
| T |
13289762 |
gttactctcaaaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagag |
13289663 |
T |
|
| Q |
175 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt |
274 |
Q |
| |
|
| ||||| || | ||| ||||| ||||||||||| || ||||| ||| | ||| ||| ||| | || | ||||| |||||| | || | | ||||||| |
|
|
| T |
13289662 |
tggttttgccaacaccgcccatacccaaaattgcgaccacaccaatactactattggtagtgccactgtcagatatcaacatactaatgagtctctcttt |
13289563 |
T |
|
| Q |
275 |
gtcacccttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactct |
343 |
Q |
| |
|
||| |||||||||| |||| ||||||| ||||||| |||||| ||||| |||||| |||||||||| |
|
|
| T |
13289562 |
atcatccttcctaccaaccataacagatttatttaccattgaacttgaaggcgttctaagagaaactct |
13289494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 75 - 396
Target Start/End: Complemental strand, 13161077 - 13160756
Alignment:
| Q |
75 |
gttactctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgaggg |
174 |
Q |
| |
|
|||||||||| |||||| |||||||| || |||||| |||| | |||| ||||||||| | |||||||| || |||||| |||| ||||||||| || | |
|
|
| T |
13161077 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagag |
13160978 |
T |
|
| Q |
175 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt |
274 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| ||| | ||| ||| ||| | || | ||||| |||||| | | | | |||| || |
|
|
| T |
13160977 |
tggttttgccaacaccgcccatacccaaaattgcaaccacaccaatactactattggtagtgccactgtcagatatcaacatactaacgagtctctcctt |
13160878 |
T |
|
| Q |
275 |
gtcacccttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatct |
374 |
Q |
| |
|
||| |||||||||| |||| ||||||||||||||| |||||| ||||| ||||| |||||||||| || || ||||||||| ||||| |||||| |
|
|
| T |
13160877 |
atcatccttcctaccaaccataacagattcatttaccattgaacttgaaggcgttcttagagaaactctcgcgctcacagtttgcaagccaaggatatct |
13160778 |
T |
|
| Q |
375 |
ttattctgtgcataaagttgca |
396 |
Q |
| |
|
| | |||||| ||||||||| |
|
|
| T |
13160777 |
ctttgttgtgcaaaaagttgca |
13160756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 75 - 396
Target Start/End: Complemental strand, 13171128 - 13170807
Alignment:
| Q |
75 |
gttactctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgaggg |
174 |
Q |
| |
|
|||||||||| |||||| |||||||| || |||||| |||| | |||| ||||||||| | |||||||| || |||||| |||| ||||||||| || | |
|
|
| T |
13171128 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagag |
13171029 |
T |
|
| Q |
175 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt |
274 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| ||| | ||| ||| ||| | || | ||||| |||||| | || | | ||||||| |
|
|
| T |
13171028 |
tggttttgccaacaccgcccatacccaaaattgcaaccacaccaatactactattggtagtgccactgtcagatatcaacatactaatgagtctctcttt |
13170929 |
T |
|
| Q |
275 |
gtcacccttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatct |
374 |
Q |
| |
|
||| ||||||| || |||| ||||||||||||||| |||||| ||||| ||||| |||||||||| | || ||||||||| ||||| |||||| |
|
|
| T |
13170928 |
atcatccttccttccaaccataacagattcatttaccattgaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaaggatatct |
13170829 |
T |
|
| Q |
375 |
ttattctgtgcataaagttgca |
396 |
Q |
| |
|
| | |||||| ||||||||| |
|
|
| T |
13170828 |
ctctgttgtgcaaaaagttgca |
13170807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 10527225 - 10527157
Alignment:
| Q |
282 |
ttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactctagcactt |
350 |
Q |
| |
|
||||||||||| | |||||||||||||||| ||||||| ||||| ||||||||||||| |||| ||||| |
|
|
| T |
10527225 |
ttcctacccacaatgacagattcatttaccactgaacttgaaggggttctacgagaaaatctatcactt |
10527157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 11782173 - 11782245
Alignment:
| Q |
270 |
tctttgtcacccttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactc |
342 |
Q |
| |
|
||||| ||| | ||||||||||||||| |||||| ||||| | ||||||| ||||| |||||| |||||||| |
|
|
| T |
11782173 |
tctttatcatcattcctacccaccacgtcagattgatttagcactgaacttgaaggggttctagaagaaactc |
11782245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 26907053 - 26906691
Alignment:
| Q |
16 |
ggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagccca |
115 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
26907053 |
ggacatcaagattattggtatcccaagttctggaagtgaccgattcaaggagagatttggttactctcataatatcaaaatcctcagacacacaaaccca |
26906954 |
T |
|
| Q |
116 |
tgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26906953 |
tgccttcaaatcaaaatgccgttgaacttctttatcattgtaaagaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
26906854 |
T |
|
| Q |
216 |
cctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctg |
315 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
26906853 |
cctatattattatgggttgtgtctctctctgatagcaacatattcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactg |
26906754 |
T |
|
| Q |
316 |
aactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttat |
378 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26906753 |
aacttgaaggtgttctacgagaaactctagcacttttagtttgcaaaccaaggatatctttat |
26906691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 17852898 - 17853069
Alignment:
| Q |
57 |
gattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgt |
156 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| || || |||||| |||| || || | ||||||||| |||| ||| ||||||||||||| |
|
|
| T |
17852898 |
gattcaaggagagacttggttactctcacaacatcaaaatcttctgatacacaaacccaggctttgagatcaaaatgatgttcaaccttttcatcattgt |
17852997 |
T |
|
| Q |
157 |
aaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttat |
228 |
Q |
| |
|
||||||| || || ||||| ||||| || | ||||||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
17852998 |
aaacaagctgtgcaagggtcgttttaccgacacctcccatccccaatattgcaacaacacctaaattgttat |
17853069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 17853126 - 17853194
Alignment:
| Q |
282 |
ttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactctagcactt |
350 |
Q |
| |
|
||||| || |||| |||||||||||||||| | ||||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
17853126 |
ttccttcctaccatgacagattcatttaccacggaacttgaaggggttctacgagaaactctaccactt |
17853194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 7128961 - 7129038
Alignment:
| Q |
89 |
atcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttg |
166 |
Q |
| |
|
||||||||| ||||| |||||| ||||| ||||| |||||||||||||| |||| || |||||||| |||||||| |
|
|
| T |
7128961 |
atcaaaatcatcagaaacacaaacccattttttcaactcaaaatgttgttgcacttctttgtcattgtatacaagttg |
7129038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 282 - 396
Target Start/End: Original strand, 44957888 - 44958002
Alignment:
| Q |
282 |
ttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattct |
381 |
Q |
| |
|
||||| ||||||| | ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| || |
|
|
| T |
44957888 |
ttcctgcccaccataatagattcattaacccctgaacttgaaggtgttctatgagaaactctagcacttttagtttccaaaccaattatatctttatgct |
44957987 |
T |
|
| Q |
382 |
gtgcataaagttgca |
396 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
44957988 |
gtgcaaaaagttgca |
44958002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 57 - 228
Target Start/End: Complemental strand, 11485132 - 11484961
Alignment:
| Q |
57 |
gattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgt |
156 |
Q |
| |
|
||||||||||| |||||||||| |||| | ||| |||||||| || |||||| ||||||| || | ||||||||| |||| |||||||||||| |||| |
|
|
| T |
11485132 |
gattcaaggagggacttggttatcctcacgacatcgaaatcctccgatacacaaacccatgctttgagatcaaaatgctgttcaactttttcatcgttgt |
11485033 |
T |
|
| Q |
157 |
aaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttat |
228 |
Q |
| |
|
|||||||||| || ||||| ||||| || | |||||||| ||||||||||||||||||||| ||| |||| |
|
|
| T |
11485032 |
aaacaagttgtgcaagggtcgttttaccgacgcctcccataaccaaaattgcaacaacacctaaattattat |
11484961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 44957664 - 44957834
Alignment:
| Q |
58 |
attcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgta |
157 |
Q |
| |
|
||||||| |||||||| |||| ||| | || || |||||||| || ||||| |||||| || | ||| |||||||||| ||||||| ||||||||| |
|
|
| T |
44957664 |
attcaagaagagactttgttattctaacaacattgaaatcctctgatacacatatccatgctttgagatcgaaatgttgttcaacttttatatcattgta |
44957763 |
T |
|
| Q |
158 |
aacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttat |
228 |
Q |
| |
|
||||||||| ||||| || ||||| || | ||||||||| || || | ||||||||||||| ||| |||| |
|
|
| T |
44957764 |
aacaagttgtgcgagagtcgttttaccgacacctcccatacctaaggtggcaacaacacctaaattattat |
44957834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 11484904 - 11484842
Alignment:
| Q |
282 |
ttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactcta |
344 |
Q |
| |
|
||||| ||||||| ||||||||||| ||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
11484904 |
ttccttcccaccataacagattcattcaccactgaacttgatggtgttctacgagaaactcta |
11484842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 75 - 396
Target Start/End: Original strand, 145911 - 146232
Alignment:
| Q |
75 |
gttactctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgaggg |
174 |
Q |
| |
|
|||||||||| |||||| |||||||| || |||||| |||| | |||| ||||||||| | |||||||| || |||||| |||| ||||||||| || | |
|
|
| T |
145911 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagag |
146010 |
T |
|
| Q |
175 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt |
274 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| ||| | ||| ||| ||| | || | ||||| |||||| | || | | ||||||| |
|
|
| T |
146011 |
tggttttgccaacaccgcccatacccaaaattgcaaccacaccaatactactattggtagtgccactgtcagatatcaacatactaatgagtctctcttt |
146110 |
T |
|
| Q |
275 |
gtcacccttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatct |
374 |
Q |
| |
|
||| |||||||||| |||| ||||||||||||||| |||||| ||||| ||||| |||||||||| | || ||||||||| ||||| |||||| |
|
|
| T |
146111 |
atcatccttcctaccaaccataacagattcatttaccattgaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaaggatatct |
146210 |
T |
|
| Q |
375 |
ttattctgtgcataaagttgca |
396 |
Q |
| |
|
| | |||||| ||||||||| |
|
|
| T |
146211 |
ctctgttgtgcaaaaagttgca |
146232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 75 - 396
Target Start/End: Original strand, 135860 - 136181
Alignment:
| Q |
75 |
gttactctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgaggg |
174 |
Q |
| |
|
|||||||||| |||||| |||||||| || |||||| |||| | |||| ||||||||| | |||||||| || |||||| |||| ||||||||| || | |
|
|
| T |
135860 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagag |
135959 |
T |
|
| Q |
175 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt |
274 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| ||| | ||| ||| ||| | || | ||||| |||||| | || | | ||||||| |
|
|
| T |
135960 |
tggttttgccaacaccgcccatacccaaaattgcaaccacaccaatactactattggtagtgccactgtcagatatcaacatactaatgagtctctcttt |
136059 |
T |
|
| Q |
275 |
gtcacccttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatct |
374 |
Q |
| |
|
||| ||||||| || |||| ||||||||||||||| |||||| ||||| ||||| |||||||||| | || ||||||||| ||||| |||||| |
|
|
| T |
136060 |
atcatccttccttccaaccataacagattcatttaccattgaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaaggatatct |
136159 |
T |
|
| Q |
375 |
ttattctgtgcataaagttgca |
396 |
Q |
| |
|
| | |||||| ||||||||| |
|
|
| T |
136160 |
ctctgttgtgcaaaaagttgca |
136181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 49985 - 50081
Alignment:
| Q |
280 |
ccttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatcttt |
376 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| ||||| || | |||||||||||||||| |||||||||||| |
|
|
| T |
49985 |
ccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaagtatatcttt |
50081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 29836795 - 29836587
Alignment:
| Q |
20 |
atcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgcc |
119 |
Q |
| |
|
|||||| |||||| ||| |||| |||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||||||||| |||| | |
|
|
| T |
29836795 |
atcaaggttattggtattccattctcttgaagtgacaacttcaaggagagatttggttactctcaacatatcaaaatcttcagacacacaaacccagact |
29836696 |
T |
|
| Q |
120 |
ttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgagggtagtttttcctaaacctcccatgcccaaaattgcaacaacaccta |
219 |
Q |
| |
|
| | ||||||||| | || ||||| ||| | ||||| | |||| | |||||||| ||||| || | |||||||||||| |||||| || ||||||| |
|
|
| T |
29836695 |
tgtacatcaaaatgatttttaacttcttcctggttgtatataagtcgagcgagggtcgttttaccgatacctcccatgcctgtaattgcgactacaccta |
29836596 |
T |
|
| Q |
220 |
tattgttat |
228 |
Q |
| |
|
|||| |||| |
|
|
| T |
29836595 |
tattattat |
29836587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 31679703 - 31679845
Alignment:
| Q |
73 |
tggttactctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgggcgag |
172 |
Q |
| |
|
||||||| ||||||| |||||| || || |||| |||| |||| || || | ||||||| ||| |||||| | || ||||||||||| |||||| || || |
|
|
| T |
31679703 |
tggttaccctcaaaacatcaaactcttcggacagacaaacccaagcttttacatcaaaacgttcttgaacatctttatcattgtaaagaagttgagctag |
31679802 |
T |
|
| Q |
173 |
ggtagtttttcctaaacctcccatgcccaaaattgcaacaaca |
215 |
Q |
| |
|
|| ||||| || | |||||||||||| ||||||| ||||||| |
|
|
| T |
31679803 |
ggctgttttaccgacacctcccatgccgaaaattgaaacaaca |
31679845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 246 - 394
Target Start/End: Original strand, 31679876 - 31680024
Alignment:
| Q |
246 |
gatagcaacatgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactctag |
345 |
Q |
| |
|
||||||||||| || ||| | ||||||| |||| ||||||||| |||| || ||||| || ||| |||||| |||||||||||| || |||| ||| |
|
|
| T |
31679876 |
gatagcaacatattagttagtttctctttatcactcttcctaccaaccatgaaagattgatctactagtgaacttgaaggtgttctaagaaaaaccctac |
31679975 |
T |
|
| Q |
346 |
cacttttagtttgcaaaccaagtatatctttattctgtgcataaagttg |
394 |
Q |
| |
|
||||| ||||||||| ||||| |||||||| | |||||| ||||||| |
|
|
| T |
31679976 |
cacttacagtttgcaacccaaggatatctttttgttgtgcaaaaagttg |
31680024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University