View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_52 (Length: 397)
Name: NF6876A_low_52
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 5362029 - 5361662
Alignment:
| Q |
17 |
acatccaaacattccacaatgagagccaacgtaatcagggtaaagagttacttttgcaataacatttaacatacatttcacttcactttattattaataa |
116 |
Q |
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| T |
5362029 |
acatccaaacattccacaatgagagccaacgtaatcagggtaaagagttacttttgcaataacatttaacatacatttcacttcactttattattaataa |
5361930 |
T |
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| Q |
117 |
tcctctcttcttatcctaatcatgtgacaatatttaagtactaaatttatgtagcattgttatattcaaagcagcatagtccaaaacaacaacattcacc |
216 |
Q |
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| T |
5361929 |
tcctctcttcttatcctaatcatgtgacaatatttaagtactaaatttatgtagcattgttatattcaaagcagcatagtccaaaacaacaacattcacc |
5361830 |
T |
|
| Q |
217 |
ccaaaaacaaggtacaatgaatgttagttaaaagcataaaacaaaacataaatttctaatacataacaatgttgataaattgataccatttcgcacgtgc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5361829 |
ccaaaaacaaggtacaatgaatgttagttaaaagcataaaacaaaacataaatttctaatatataacaatgttgataaattgataccatttcgcacgtgc |
5361730 |
T |
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| Q |
317 |
ggcgagtttaagcggcattggttgagattcacaacaaggtccttccatagcaaccttatgatgtccat |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5361729 |
ggcgagtttaagcggcattggttgagattcacaacaaggtccttccatagcaaccttatgaagtccat |
5361662 |
T |
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